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TCGAWorkflow
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Postdoc
TCGAWorkflow
11 weeks ago
sameerahmadguru
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Gene A mutation vs Gene B amplification using TCGA datasets
TCGAWorkflow
12 months ago
Begin-R
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tcga expression data
TCGAWorkflow
updated 19 months ago by
ATpoint
★ 4.0k • written 19 months ago by
fatemehfakhari74
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Query on TCGA
TCGAbiolinks
TCGAWorkflow
19 months ago
hemangininaik09
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Identifying presence of certain genes
DifferentialExpression
TCGAWorkflow
2.5 years ago
Sam
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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