Bioconductor TFBSTools

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654

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TFBSTools R forloop

updated 2.4 years ago by onlineclasshelpnow • 0 • written 2.4 years ago by HELEN • 0

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625

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TFBSTools FASTA RStudio

2.4 years ago HELEN • 0

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742

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 2.5 years ago by James W. MacDonald 65k • written 2.5 years ago by HELEN • 0

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806

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error TFBSTools R

2.5 years ago HELEN • 0

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613

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TFBSTools RStudio R

2.5 years ago HELEN • 0

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2.3k

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pwm tfbstools jaspar

updated 6.6 years ago by Ge Tan ▴ 20 • written 6.6 years ago by chrisclarkson100 ▴ 50

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TFBSTools looping PFMatrixList PFMatrix bioconductor

7.0 years ago • updated 6.9 years ago nathan.lawlor03 • 0

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1.0k

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bioconductor tfbstools

updated 7.5 years ago by Ge Tan ▴ 20 • written 7.5 years ago by laurabuggiotti • 0

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1.3k

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tfbstools jaspar

updated 8.5 years ago by Ge Tan ▴ 20 • written 8.5 years ago by JasonLouisStein • 0

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1.3k

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tfbstools

updated 8.9 years ago by Ge Tan ▴ 20 • written 9.1 years ago by franceskrussell • 0

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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…

Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Votes

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

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