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TFBSTools
•
reset
0
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2
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815
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Error in TFBSTools at SitesetList
error
TFBSTools
R
2.5 years ago
HELEN
• 0
0
votes
1
reply
1.3k
views
TFBSTools access to JASPAR2014 via getMatrixSet()
tfbstools
jaspar
updated 8.5 years ago by
Ge Tan
▴ 20 • written 8.6 years ago by
JasonLouisStein
• 0
0
votes
1
reply
1.1k
views
Errore: subscript contains NAs - when running searchPairBSgenome in TFBTools
bioconductor
tfbstools
updated 7.5 years ago by
Ge Tan
▴ 20 • written 7.5 years ago by
laurabuggiotti
• 0
1
vote
1
reply
1.8k
views
TFBSTools: Appending objects to PFMatrixList
TFBSTools
looping
PFMatrixList
PFMatrix
bioconductor
7.0 years ago
nathan.lawlor03
• 0
2
votes
1
reply
2.3k
views
Error: unable to find an inherited method for function searchSeq for signature matrix
pwm
tfbstools
jaspar
updated 6.6 years ago by
Ge Tan
▴ 20 • written 6.6 years ago by
chrisclarkson100
▴ 50
0
votes
1
reply
662
views
write a for loop for searching TF with TFBSTools
TFBSTools
R
forloop
updated 2.5 years ago by
onlineclasshelpnow
• 0 • written 2.5 years ago by
HELEN
• 0
0
votes
1
reply
1.3k
views
TFBSTools pvalues function hangs on certain inputs
tfbstools
updated 8.9 years ago by
Ge Tan
▴ 20 • written 9.1 years ago by
franceskrussell
• 0
0
votes
1
reply
754
views
TFBSTools and readFASTA
TFBSTools
DNASeqData
readFASTA
DNA
RStudio
updated 2.5 years ago by
James W. MacDonald
65k • written 2.5 years ago by
HELEN
• 0
0
votes
0
replies
629
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
2.5 years ago
HELEN
• 0
0
votes
0
replies
617
views
TFBSTools- analysis for trascriprion factors
TFBSTools
RStudio
R
2.5 years ago
HELEN
• 0
10 results • Page
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Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Answer: get BM error
by
James W. MacDonald
65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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