Bioconductor TFBSTools

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tfbstools

updated 8.9 years ago by Ge Tan ▴ 20 • written 9.1 years ago by franceskrussell • 0

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tfbstools jaspar

updated 8.5 years ago by Ge Tan ▴ 20 • written 8.5 years ago by JasonLouisStein • 0

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bioconductor tfbstools

updated 7.5 years ago by Ge Tan ▴ 20 • written 7.5 years ago by laurabuggiotti • 0

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TFBSTools looping PFMatrixList PFMatrix bioconductor

6.9 years ago nathan.lawlor03 • 0

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pwm tfbstools jaspar

updated 6.6 years ago by Ge Tan ▴ 20 • written 6.6 years ago by chrisclarkson100 ▴ 50

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654

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TFBSTools R forloop

updated 2.4 years ago by onlineclasshelpnow • 0 • written 2.4 years ago by HELEN • 0

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error TFBSTools R

2.5 years ago HELEN • 0

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740

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 2.5 years ago by James W. MacDonald 65k • written 2.5 years ago by HELEN • 0

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TFBSTools RStudio R

2.5 years ago HELEN • 0

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TFBSTools FASTA RStudio

2.4 years ago HELEN • 0

10 results • Page 1 of 1

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Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k

In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …

Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k

```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…

Comment: DESeq2 setting significant p-value by Dev • 0

after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by jacques.imbert • 0

Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.

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Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

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