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TSS
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Normalization of chip-seq data in manually specified regions using CSAW
chip-seq
TSS
TMM
csaw
updated 7.8 years ago by
Aaron Lun
★ 28k • written 7.8 years ago by
saadmurtazakhan
▴ 10
0
votes
3
replies
1.8k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.0 years ago
Ryan C. Thompson
★ 7.9k
0
votes
2
replies
1.2k
views
calculating TSS enrichment from ATACseq data
GenomicRanges
Views
ATACseq
TSS
4.9 years ago
tangming2005
▴ 190
1
vote
2
replies
9.0k
views
Interpreting TSS Enrichment Score Summary
atacseq
atacseqqc
tss
enrichment
updated 3.6 years ago by
Ou, Jianhong
★ 1.3k • written 3.6 years ago by
Arpi Beshlikyan
• 0
0
votes
1
reply
1.3k
views
[ChIPseeker; feature request] More flexibility in specifying the TSS region
ChIPseeker
featurerequest
tss
updated 8.1 years ago by
Guangchuang Yu
★ 1.2k • written 8.1 years ago by
balwierz
▴ 40
1
vote
0
replies
1.9k
views
How to test or estimate differential TSS/promoter usage/expression based on RNA-seq data only
tximport
differential isoform usage
salmon
tss
rna-seq
6.8 years ago
Steffen Heyne
▴ 10
0
votes
0
replies
876
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
5.3 years ago
bharata1803
▴ 60
7 results • Page
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Recent ...
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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