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EdgeR: Explaning dispersion types to newbies
edger dispersion estimatedispersions visualization teaching
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 20
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News: Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication workflows benchmark teaching News
updated 8.0 years ago by ▴ 10 • written 8.1 years ago by ★ 13k
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News: Bioconductor teaching week
teaching Carpentries
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News: New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
computational biology bioinformatics teaching master News
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Job: Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
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Job: Bioconductor Community Manager
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
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News: Bioconductor Carpentries instructor training
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17 months ago Maria Doyle ▴ 70
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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