Bioconductor Time-course

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votes

576

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microarray normalization tscR time-course

updated 3.7 years ago by Kevin Blighe ★ 3.9k • written 3.7 years ago by keremwai • 0

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797

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deseq2 time-serie time-course fold-change

updated 4.0 years ago by swbarnes2 ★ 1.3k • written 4.0 years ago by Victor Chano • 0

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634

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deseq2 design time-course

updated 4.8 years ago by Michael Love 41k • written 4.8 years ago by Victor Chano • 0

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1.4k

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deseq2 Time-course

updated 5.0 years ago by Michael Love 41k • written 5.0 years ago by h.valipour.k • 0

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2.0k

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deseq2 time-course

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by rbenel ▴ 40

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932

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masigpro covariates limma differential expression time-course

6.6 years ago veersingh.marwah • 0

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2.4k

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limma multiple time points time-course differential expression

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by Jake • 0

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2.0k

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rnaseq deseq2 time-course

updated 6.8 years ago by Gavin Kelly ▴ 680 • written 6.8 years ago by inzirio ▴ 10

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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