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Time-course
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2
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8
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2.4k
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Limma for differential expression in a time-course
limma
multiple time points
time-course
differential expression
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
Jake
• 0
1
vote
7
replies
2.0k
views
Visualization for Time Course "LRT" test in DESeq2
deseq2
time-course
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
rbenel
▴ 40
1
vote
3
replies
2.0k
views
[DESeq2] time-course Experimental design
rnaseq
deseq2
time-course
updated 6.7 years ago by
Gavin Kelly
▴ 680 • written 6.7 years ago by
inzirio
▴ 10
2
votes
3
replies
1.4k
views
Three-factor design with DESeq2
deseq2
Time-course
updated 5.0 years ago by
Michael Love
41k • written 5.0 years ago by
h.valipour.k
• 0
1
vote
2
replies
790
views
Time-series analysis with control and treated samples, and Fold Change extraction in DESeq2
deseq2
time-serie
time-course
fold-change
updated 4.0 years ago by
swbarnes2
★ 1.3k • written 4.0 years ago by
Victor Chano
• 0
0
votes
1
reply
575
views
Input of tscR
microarray
normalization
tscR
time-course
updated 3.7 years ago by
Kevin Blighe
★ 3.9k • written 3.7 years ago by
keremwai
• 0
0
votes
1
reply
632
views
DESeq2 analysis of multifactorial RNAseq experiment
deseq2
design
time-course
updated 4.8 years ago by
Michael Love
41k • written 4.8 years ago by
Victor Chano
• 0
0
votes
0
replies
931
views
How to specify covariates in maSigPro analysis (like limma)
masigpro
covariates
limma
differential expression
time-course
6.6 years ago
veersingh.marwah
• 0
8 results • Page
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Answer: Why p value inconsistent when using different number of pathway score?
by
ATpoint
★ 4.0k
Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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