Showing : TimeSeriesExperiment • reset
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time course microarray data ArrayExpress database
R GillespieColin ArrayExpress import TimeSeriesExperiment
updated 6 months ago by ▴ 40 • written 18 months ago by ▴ 20
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Proteomics-time series with repeated measures
Proteomics limma repeatedmeasures TimeSeriesExperiment
17 months ago proteome_AO • 0
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Time serious analysis Wald test in results()
DESeq2 TimeSeriesExperiment
updated 18 months ago by 41k • written 19 months ago by • 0
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Comparison between treatment timepoints in a single timeseries (control is first timepoint)
DESeq2 single-timeseries TimeSeriesExperiment
updated 19 months ago by 41k • written 19 months ago by • 0
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Time-series analyses of a multifactor design with DESeq2
DESeq2 MultipleFactors TimeSeriesExperiment
updated 19 months ago by 41k • written 19 months ago by • 0
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Deseq2 contrasts and design for paired analysis
TimeSeriesExperiment RNASeq design DESeq2
updated 2.4 years ago by 41k • written 2.4 years ago by • 0
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limma: pvalues for coefficients topTable
TimeSeriesExperiment Regression top limma
updated 2.6 years ago by 65k • written 2.6 years ago by • 0
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DESeq2 time course and dosage response
LRT Design DESeq2 doseResponse TimeSeriesExperiment
updated 2.7 years ago by 41k • written 2.7 years ago by • 0
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Time series analysis - DESeq2
TimeSeriesExperiment
updated 3.0 years ago by 41k • written 3.0 years ago by ▴ 10
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Job: Biostatistics Research Associate, York, UK
QTL fourier TimeSeriesExperiment timecoursedata
3.0 years ago Daphne • 0
10 results • Page 1 of 1
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Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100
See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…
Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850
This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…
Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k
Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…
Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k
I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…
Answer: rlog transformation by Michael Love 41k
It is dependent on the other samples in the dataset.
Votes
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
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