Bioconductor TimeSeriesExperiment

Showing : TimeSeriesExperiment • reset

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1.9k

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 6 months ago by jacorvar ▴ 40 • written 18 months ago by eraldagjika ▴ 20

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1.7k

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LRT Design DESeq2 doseResponse TimeSeriesExperiment

updated 2.7 years ago by Michael Love 41k • written 2.7 years ago by Mari • 0

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950

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QTL fourier TimeSeriesExperiment timecoursedata

3.0 years ago Daphne • 0

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897

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Proteomics limma repeatedmeasures TimeSeriesExperiment

18 months ago • updated 17 months ago proteome_AO • 0

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796

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TimeSeriesExperiment Regression top limma

updated 2.7 years ago by James W. MacDonald 65k • written 2.7 years ago by Eleni • 0

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787

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TimeSeriesExperiment RNASeq design DESeq2

updated 2.4 years ago by Michael Love 41k • written 2.4 years ago by Kesava • 0

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785

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TimeSeriesExperiment

updated 3.0 years ago by Michael Love 41k • written 3.0 years ago by curiousmind007 ▴ 10

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763

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DESeq2 single-timeseries TimeSeriesExperiment

updated 19 months ago by Michael Love 41k • written 19 months ago by Jigyasa • 0

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627

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DESeq2 MultipleFactors TimeSeriesExperiment

updated 19 months ago by Michael Love 41k • written 20 months ago by Maria • 0

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618

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DESeq2 TimeSeriesExperiment

updated 19 months ago by Michael Love 41k • written 19 months ago by Jason • 0

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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…

Comment: DESeq2 output used for PCA plot on R studio by ATpoint ★ 4.0k

> Increase variability for mutants: use larger subtractive modifiers I was thinking the same as swbarnes. You're doing some data munging h…

Comment: minfi::read.metharray.exp by Basti ▴ 780

This is indeed correct now !

Comment: get BM error by Fara • 0

Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529

Comment: get BM error by Mike Smith ★ 6.5k

Can you provide an example of the Ensemble IDs you're trying to convert?

Votes

Comment: get BM error

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

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Scholar to ATpoint ★ 4.0k