Showing : TopGO • reset
1
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2
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592
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Access genes associated with GO terms for a topGO object created with gene2GO
topGO
3 months ago Dan • 0
0
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2
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568
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enrichPlot error when plotting topGO results
topGO enrichplot
updated 6 months ago by 65k • written 6 months ago by • 0
0
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1
reply
541
views
library(topGO) query
topGO scRNAseq
updated 8 months ago by ▴ 760 • written 8 months ago by • 0
1
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1
reply
536
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 11 months ago by ▴ 40 • written 11 months ago by • 0
0
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1
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740
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In .local(object, test.stat, ...) : No enrichment can pe performed - there are no feasible GO terms!
topGO
updated 11 months ago by 65k • written 11 months ago by • 0
0
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0
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443
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topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
12 months ago Priya • 0
1
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1
reply
1.0k
views
topGo error loading data
topGO GO
16 months ago peter • 0
1
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0
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773
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adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
19 months ago Kevin Gregory ▴ 10
0
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4
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2.5k
views
How to get significant genes annotated to go term using TopGO?
topGO
updated 21 months ago by ▴ 730 • written 21 months ago by ▴ 10
1
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3
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1.6k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 21 months ago by 65k • written 22 months ago by ▴ 60
0
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5
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1.9k
views
GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 22 months ago by 65k • written 22 months ago by ▴ 10
0
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0
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572
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What exactly are Nontrivial node in topGO analysis?
topGO GO
2.0 years ago theophile • 0
0
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6
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1.4k
views
extract significant gene list from specific GO namber
topGO
updated 2.1 years ago by 65k • written 2.1 years ago by • 0
4
votes
7
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1.9k
views
Updating org.Sc.sgd.db, and integration with topGO
GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser
updated 2.2 years ago by ▴ 150 • written 2.2 years ago by • 0
0
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1
reply
1.0k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 2.6 years ago by ▴ 40 • written 2.6 years ago by • 0
0
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1
reply
827
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Gene ontology of differentially expressed genes in R
topGO limma DEP
updated 2.7 years ago by 65k • written 2.7 years ago by • 0
0
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1
reply
830
views
topGo GenTable returns result column as character
GenTable topGO
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
0
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0
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635
views
topGO weight01 method: potential bug in the code
topGO weight01
3.2 years ago Vladimir • 0
1
vote
3
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1.3k
views
topGO enrichment analysis, ontology selection.
topGO enrichmentanalysis geneontology
updated 3.2 years ago by ▴ 730 • written 3.2 years ago by • 0
2
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0
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915
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Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
3.2 years ago Ben ▴ 50
1
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1
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1.6k
views
TopGO : significant GO term, but 0 gene significant in this GO term (with elim-ks method)
topGO
updated 3.2 years ago by 65k • written 3.2 years ago by • 0
1
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3
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1.3k
views
topGo custom Annotation table
customannotation enrichmentanalysis topGO
updated 3.3 years ago by 65k • written 3.3 years ago by • 0
0
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0
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747
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Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
3.4 years ago Madza Farias-Virgens • 0
0
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7
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2.3k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 3.4 years ago by 50k • written 3.4 years ago by ▴ 20
0
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4
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1.1k
views
topGO "argument is of length zero" error
GO.db topGO
updated 3.5 years ago by 65k • written 3.5 years ago by • 0
1
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6
replies
1.4k
views
How to create geneselectionfunction in TopGO: Error in .local(.Object, ...) : allGenes should be a factor or a numeric vector
R TopGO Geneenrichment
updated 3.6 years ago by 65k • written 3.6 years ago by • 0
4
votes
4
replies
1.3k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 3.6 years ago by 50k • written 3.6 years ago by ▴ 120
2
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3
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1.1k
views
Error in topGO analysis
software error topGO go
updated 3.6 years ago by ★ 3.9k • written 3.6 years ago by • 0
0
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3
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940
views
Use topGOdata in devtools package
topGO devtools R
updated 3.7 years ago by 65k • written 3.7 years ago by • 0
4
votes
8
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5.7k
views
topGO error: allGenes should be a factor or a numeric vector
topGO topgo GO term analysis
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by ▴ 10
1
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1
reply
1.1k
views
Error in GO enrichment with topGO
topGO microarray Gene ontology
updated 3.7 years ago by 65k • written 3.7 years ago by ▴ 10
4
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8
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2.1k
views
Don't let TopGo to trimm long GO names
go software error topgo rna-seq
updated 14 months ago by 65k • written 3.9 years ago by ▴ 30
0
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1
reply
660
views
Missing ALL library in BiocManager using topGO
topGO
updated 3.9 years ago by 65k • written 3.9 years ago by • 0
5
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7
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1.1k
views
Unexpected error with topGO, cannot build topGOdata object
topGO
4.0 years ago • updated 3.9 years ago abf ▴ 30
1
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3
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1.5k
views
TopGO significant genes
TopGO GO
4.0 years ago Al-a ▴ 10
0
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14
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2.2k
views
annFUN error TOPGO
TOPGO annFUN error
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
0
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1
reply
870
views
Diagnosing topGo issue - single enriched gene per enriched GO term
topGo gene enrichment ontology analysis
4.7 years ago s.bourne • 0
3
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3
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1.2k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 4.8 years ago by 65k • written 4.8 years ago by • 0
2
votes
2
replies
2.1k
views
topGO package unable to find library(ALL) and data(ALL)
topGO software error
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 60
0
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3
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1.3k
views
usage of topGO after limma
limma topGO microarray
updated 5.1 years ago by 50k • written 5.1 years ago by • 0
0
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0
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1.1k
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO AnnotationForge
5.1 years ago psutton • 0
1
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1
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1.1k
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
5.2 years ago David ROUX ▴ 20
0
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1
reply
1.5k
views
topGO: "There are no adj nodes for node"
software error topGO org.hs.eg.db
5.3 years ago natske ▴ 10
2
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6
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1.9k
views
topGO: GO terms in gene annotation do not match significant GO term output
rnaseq topgo go enrichment
updated 5.4 years ago by 65k • written 5.4 years ago by • 0
3
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9
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4.7k
views
topGO "invalid argument to unary operator"
software error topgo
updated 5.4 years ago by 65k • written 5.4 years ago by • 0
0
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0
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1.1k
views
topGO analysis runTest: non-numeric argument to binary operator
topGO
5.5 years ago Dave Th. • 0
0
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0
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1.2k
views
topGO: how to print GO descriptions only when using showSigOfNodes?
topgo
5.6 years ago anton.kratz ▴ 60
0
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4
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1.7k
views
How do you specify "chip" in printGenes of TopGO for maize data
TopGo printGenes
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
3
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3
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1.0k
views
DEXUSResult as.data.frame doesn't work well if topGO is loaded
dexus topgo
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
0
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0
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704
views
TopGOdata Object error
topgo
5.8 years ago s1607338 • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: DEG with low counts by Rajat • 0
Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…
Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k
To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…
Answer: flowStats Search Error by shepherl 3.8k
We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.
Comment: How to correct for known and surrogate variables in DESeq2? by nhaus ▴ 30
Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…
Votes
Answer: Light difference when using coef vs omit a group when compare 3 groups.
C: Add new columns to DESeqResults from text file by matching rownames.
Answer: geneList error in clusterprofiler
Comment: Memory errors using read.bismark?
Comment: Not fully paired differential gene expression analysis
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