Bioconductor TxDB.Hsapiens.UCSC.hg38.knownGene

Showing : TxDB.Hsapiens.UCSC.hg38.knownGene • reset

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3.8k

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install TxDb.Hsapiens.UCSC.hg38.knownGene

2.1 years ago Theresa ▴ 20

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3.5k

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txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

8.0 years ago enricoferrero ▴ 660

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2.8k

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txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db

updated 6.4 years ago by Simon Anders ★ 3.7k • written 6.4 years ago by Mark Dunning ★ 1.1k

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2.7k

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TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene

updated 4.5 years ago by James W. MacDonald 65k • written 4.5 years ago by Aditya ▴ 160

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2.6k

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annotation txdb.hsapiens.ucsc.hg38.knowngene bug

7.5 years ago shilin.zhao ▴ 40

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2.0k

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TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

5.0 years ago Ruichao.Zeng ▴ 10

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1.6k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.2 years ago by James W. MacDonald 65k • written 3.2 years ago by lukijanczukpawel • 0

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1.4k

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

13 months ago davidhillis • 0

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1.3k

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s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene

6.6 years ago Leonardo Collado Torres ★ 1.0k

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1.3k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 2.4 years ago by Hervé Pagès 16k • written 2.4 years ago by BioEpi • 0

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1.0k

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TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.3 years ago by shepherl 3.8k • written 4.3 years ago by bernatgel ▴ 150

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981

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.2 years ago by kayla.interdonato ▴ 160 • written 4.2 years ago by jam526 • 0

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811

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HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.3 years ago by kayla.interdonato ▴ 160 • written 4.3 years ago by Kamil Slowikowski ▴ 30

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655

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microRNA TxDb.Hsapiens.UCSC.hg38.knownGene

15 months ago Lluís Revilla Sancho ▴ 730

14 results • Page 1 of 1

Recent ...

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Votes

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0