Showing : TxDb.Hsapiens.UCSC.hg38.knownGene • reset
1
vote
12
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3.3k
views
Error: C stack usage when installing Txdb package
txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db
updated 7.1 years ago by ★ 3.8k • written 7.1 years ago by ★ 1.1k
2
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10
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3.4k
views
TxDb.Hsapiens.UCSC.hg38.ensGene doesn't exist
TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene
updated 5.3 years ago by 67k • written 5.3 years ago by ▴ 160
4
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8
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2.2k
views
TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from various chromosome being part of the same gene
MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation
22 months ago davidhillis • 0
6
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5
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1.3k
views
PTEN missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene
updated 5.0 years ago by 4.1k • written 5.0 years ago by ▴ 150
2
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5
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2.5k
views
How to construct a subset of TxDb object from TxDb.Hsapiens.UCSC.hg38.knownGene and selected genes
TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object
5.7 years ago Ruichao.Zeng ▴ 20
7
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4
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3.8k
views
PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation
8.8 years ago enricoferrero ▴ 660
2
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4
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1.2k
views
Help with Missing Gene from hg38
annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38
updated 4.9 years ago by ▴ 160 • written 4.9 years ago by • 0
0
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3
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1.7k
views
transcripts are not true in TxDb.Hsapiens.UCSC.hg38.knownGene
TxDb.Hsapiens.UCSC.hg38.knownGene
updated 3.1 years ago by 16k • written 3.1 years ago by • 0
3
votes
3
replies
2.9k
views
Transcripts in TxDb.Hsapiens.UCSC.hg38.knownGene but not in ucsc genome brower
annotation txdb.hsapiens.ucsc.hg38.knowngene bug
8.3 years ago shilin.zhao ▴ 40
0
votes
2
replies
943
views
microRNAs not available in TxDb.Hsapiens.UCSC.hg38.knownGene
microRNA TxDb.Hsapiens.UCSC.hg38.knownGene
2.0 years ago Lluís Revilla Sancho ▴ 760
0
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1
reply
71
views
promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000
TxDb.Hsapiens.UCSC.hg38.knownGene
updated 5 days ago by 67k • written 6 days ago by ▴ 20
0
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1
reply
2.1k
views
No 'TxDb.Hsapiens.UCSC.hg38.knownGene' object
TxDb.Hsapiens.UCSC.hg38.knownGene
updated 3.9 years ago by 67k • written 3.9 years ago by • 0
2
votes
1
reply
4.6k
views
Bioconductor Package Installation
install TxDb.Hsapiens.UCSC.hg38.knownGene
2.8 years ago Theresa ▴ 20
3
votes
1
reply
996
views
HLA genes missing from TxDb.Hsapiens.UCSC.hg38.knownGene
HLA TxDb.Hsapiens.UCSC.hg38.knownGene
updated 5.0 years ago by ▴ 160 • written 5.0 years ago by ▴ 30
1
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0
replies
1.7k
views
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene
7.3 years ago Leonardo Collado Torres ★ 1.1k
15 results • Page 1 of 1
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Answer: Curiously shaped volcano plot with using oarfish + swish to do differential gene by Michael Love 43k
See swish vignette, these are explained.
Comment: Problems with oarfish + tximport + swish by Michael Love 43k
Great thanks for posting the issue and sticking with it Annaleigh
Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0
Awesome possum! Update works!! Thank you so much for the help and guidance!
Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0
Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/
Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k
> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…
Votes
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Limma Interaction Effect with Covariates
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