Bioconductor TxDb.Hsapiens.UCSC.hg38.knownGene

Showing : TxDb.Hsapiens.UCSC.hg38.knownGene • reset

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txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

8.7 years ago enricoferrero ▴ 660

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1.3k

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TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene

updated 5.0 years ago by shepherl 4.1k • written 5.0 years ago by bernatgel ▴ 150

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

22 months ago davidhillis • 0

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993

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HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 5.0 years ago by kayla.interdonato ▴ 160 • written 5.0 years ago by Kamil Slowikowski ▴ 30

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2.9k

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annotation txdb.hsapiens.ucsc.hg38.knowngene bug

8.3 years ago • updated 8.2 years ago shilin.zhao ▴ 40

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1.2k

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.9 years ago by kayla.interdonato ▴ 160 • written 4.9 years ago by jam526 • 0

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TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

5.7 years ago Ruichao.Zeng ▴ 20

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3.4k

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TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene

updated 5.3 years ago by James W. MacDonald 67k • written 5.3 years ago by Aditya ▴ 160

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4.6k

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install TxDb.Hsapiens.UCSC.hg38.knownGene

2.8 years ago Theresa ▴ 20

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txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db

updated 7.1 years ago by Simon Anders ★ 3.8k • written 7.1 years ago by Mark Dunning ★ 1.1k

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s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene

7.3 years ago Leonardo Collado Torres ★ 1.1k

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2.1k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.9 years ago by James W. MacDonald 67k • written 3.9 years ago by lukijanczukpawel • 0

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943

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microRNA TxDb.Hsapiens.UCSC.hg38.knownGene

2.0 years ago Lluís Revilla Sancho ▴ 760

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 12 hours ago by James W. MacDonald 67k • written 20 hours ago by linouhao ▴ 20

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1.7k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.1 years ago by Hervé Pagès 16k • written 3.1 years ago by BioEpi • 0

15 results • Page 1 of 1

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

A: Linear regression in DESeq2

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

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