Bioconductor UTRs

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genomeintervals UTRs exons CDS GenomicRanges

updated 7.4 years ago by Michael Lawrence ★ 11k • written 7.4 years ago by rubi ▴ 110

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Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20

Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…

Comment: Help using rtracklayer for gene ID extraction by James W. MacDonald 67k

Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…

Comment: miRTarRnaseq library by María Calvo • 0

Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …

Answer: Need new version : tx2gene.gencode.v47.csv by Guido Hooiveld ★ 4.1k

Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …

Comment: Help using rtracklayer for gene ID extraction by Aichatou • 0

Hello, Please disregard the previous post. it's working now, i think. I am able to create the txdb object but I can't see all the other inf…

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Answer: Mapping Between GenBank ID's and Uniprot

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