Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
No posts found.
0 results • Page
1 of 1
Recent ...
Replies
Comment: sesameDataCache is not work properly on my system
by
alyssa-daniel
• 0
Could you please post your code here? I am having a heck of a time trying to get mine to work... and I am newer to R so I am not sure I kno…
Answer: EdgeR: Exact test and glmQLFTest produce very different results
by
Gordon Smyth
48k
Yes, what you see is what is expected. The whole purpose of the edgeR-quasi pipeline is to give more rigorous control of the FDR rate so it…
Comment: limma::voom vs edgeR::voomLmFit - when to use?
by
Gordon Smyth
48k
Reitering James' answer, there is no reason not to use `voomLmFit` if you were planning to follow `voom` by `lmFit`. The reason why `voomLm…
Answer: EdgeR: Exact test and glmQLFTest produce very different results
by
James W. MacDonald
64k
You should just use the quasi-likelihood pipeline, which controls type I error better than the exact test or likelihood ratio test.
Answer: limma::voom vs edgeR::voomLmFit - when to use?
by
James W. MacDonald
64k
The workflow you reference was written in 2018, and hasn't been updated since 2020, except for version bumps (it's meant to parallel an F10…
Votes
Answer: EdgeR: Exact test and glmQLFTest produce very different results
Answer: limma::voom vs edgeR::voomLmFit - when to use?
A: DSS understanding delta option and posterior probability
Comment: Ensembl down???
Answer: How should I run ssGSEA Hallmark Enrichment Analysis?
Awards
• All
Popular Question
to
Gordon Smyth
48k
Popular Question
to
Endre Sebestyén
▴ 70
Popular Question
to
ramonfallon
▴ 20
Popular Question
to
ATpoint
★ 3.6k
Popular Question
to
Jitendra
▴ 10
Locations
• All
United States,
just now
Pittsburgh, Pennsylvania, United States of America,
1 minute ago
United States,
1 minute ago
WEHI, Melbourne, Australia,
9 minutes ago
United States,
11 minutes ago
Traffic: 695 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6