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Ubuntu
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0
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6
replies
4.2k
views
cummeRbund installation error on Ubuntu 14.04
software error
cummerbund
ubuntu
9.4 years ago • updated 9.1 years ago
mbk0asis
• 0
2
votes
4
replies
1.6k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq
meta-analysis
ubuntu
6.9 years ago
rezapanahi222
• 0
1
vote
5
replies
2.2k
views
Unable to install scde in ubuntu 16.04 , this is what happens when I install scde
scde
ubuntu
dependencies
R
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
aditya531996
• 0
0
votes
2
replies
2.3k
views
Unable to install DeSeq2 and EdgeR in ubuntu 16.04 , this is what happens when I install DeSeq2
deseq2
ubuntu
edger
dependencies
7.2 years ago
aditya531996
• 0
1
vote
4
replies
2.5k
views
biocLite updating problem with Ubuntu 17.10
ubuntu
biocgenerics
s4vectors
IRanges
annotationdbi
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
KRA
• 0
9
votes
32
replies
6.0k
views
Rsamtools v 1.99.6 installation error
Rsamtools
BiocManager
R 3.6
ubuntu
updated 5.0 years ago by
Hervé Pagès
16k • written 5.0 years ago by
kubovcij
• 0
2
votes
2
replies
2.4k
views
Error during installation of ChemmineOB R package
Chemmine
Ubuntu
OpenBabel
updated 8.0 years ago by
Thomas Girke
★ 1.7k • written 8.0 years ago by
elisa.micarelli
▴ 10
5
votes
2
replies
1.1k
views
Codelink annotation error in Ubuntu 16.04
codelink
annotation
ubuntu
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
Agaz Hussain Wani
▴ 260
1
vote
2
replies
1.5k
views
Multiple problems with TCGAbiolinks 2.2.6
software error
tcgabiolinks
ubuntu
updated 7.4 years ago by
Tiago Chedraoui Silva
▴ 260 • written 7.4 years ago by
lmorrill
• 0
0
votes
4
replies
2.2k
views
Biocgenerics updating problem on ubuntu 17.10
bioconductor
biocgenerics
ubuntu
package updates
r update
6.4 years ago
siinemselvi
• 0
1
vote
3
replies
1.8k
views
Error on zlib.h while installing esATAC on Ubutu
software error
esATAC
zlib.h
Ubuntu
Tutorial
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
vedbar
• 0
0
votes
1
reply
1.9k
views
DeSeq2 installation on ubuntu fails
deseq2
R
ubuntu
bioconductor
rstudio
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
drumarsohail
• 0
1
vote
1
reply
9.1k
views
Problems to install a package - Ubuntu
ubuntu
package
installation
varianttools
updated 8.9 years ago by
James W. MacDonald
65k • written 8.9 years ago by
lelemraposo
• 0
0
votes
5
replies
2.0k
views
Flowclust install probelms on Ubuntu
flowclust
ubuntu
install
error
8.9 years ago
gareth.howell
• 0
5
votes
2
replies
2.4k
views
how can I access my local files (data, R-scripts) from the *docker* R/Bioconductor?
docker
ubuntu
updated 8.6 years ago by
Dan Tenenbaum
★ 8.2k • written 8.6 years ago by
anton.kratz
▴ 60
0
votes
2
replies
8.6k
views
[SOLVED] BUG REPORT: Ubuntu 14.04 xps Installation libcrypto.so.10
xps
ubuntu
updated 8.2 years ago by
cstrato
★ 3.9k • written 8.2 years ago by
alexvpickering
▴ 110
0
votes
3
replies
2.8k
views
ERROR: compilation failed for package RSQLite
ubuntu
installation
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
Deleted
▴ 70
0
votes
1
reply
1.0k
views
mzR installation on Ubuntu 16.04
mzr
package installation
ubuntu
updated 6.2 years ago by
Laurent Gatto
1.6k • written 6.2 years ago by
buescher
• 0
18 results • Page
1 of 1
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Replies
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
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