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Comment: LogFC values in edgeR - w/wo intercept
by
JK Kim
• 0
Thanks, Dr. Smyth!
Comment: LogFC values in edgeR - w/wo intercept
by
JK Kim
• 0
Oops. I just corrected the URL. Thank you Dr. Smyth.
Comment: Fail to run RupRadar
by
Qingwei
• 0
Dear Sergi, Yeah, it works. ```r dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads, GTF.featureType="cDNA_match", GTF.attrType="ID…
Comment: LogFC values in edgeR - w/wo intercept
by
Gordon Smyth
45k
The link you've entered for "A guide to creating design matrices for gene expression experiments" doesn't work. Could you please correct th…
Comment: LogFC values in edgeR - w/wo intercept
by
Gordon Smyth
45k
You can still form contrasts in some circumstances, but not the contrast you used. In your case there is no need for a contrast. For the in…
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Comment: LogFC values in edgeR - w/wo intercept
Answer: LogFC values in edgeR - w/wo intercept
Answer: LogFC values in edgeR - w/wo intercept
Answer: broken chain import in liftOver
Answer: toGRanges help!
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