Bioconductor Update

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Versions Update BindingSiteFinder

updated 15 months ago by Mike Smith ★ 6.5k • written 15 months ago by M.Klostermann • 0

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1.2k

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update Omixer maintainer

updated 3.4 years ago by shepherl 3.8k • written 3.4 years ago by l.j.sinke • 0

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1.3k

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software error packages update

updated 3.8 years ago by James W. MacDonald 65k • written 3.8 years ago by bs14ab • 0

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3.0k

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biocmanager valid update packages

updated 3.9 years ago by Kevin Blighe ★ 3.9k • written 3.9 years ago by bs14ab • 0

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654

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update new release version

4.6 years ago zzrickli • 0

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2.0k

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biocLite update all default ask

updated 5.2 years ago by Fischer-philipp ▴ 30 • written 5.2 years ago by rgiannico ▴ 10

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1.1k

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PANTHER.db update annotation go

updated 5.2 years ago by Martin Morgan 25k • written 5.2 years ago by alfonsosaera • 0

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788

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support.bioconductor.org update News

5.3 years ago shepherl 3.8k

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872

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bioclite package installation update

7.1 years ago Malcolm Cook ★ 1.6k

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2.0k

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installation update

updated 7.2 years ago by James W. MacDonald 65k • written 7.2 years ago by debg • 0

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6.9k

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bioconductor biocupgrade upgrade update bioclite

8.0 years ago enricoferrero ▴ 660

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6.5k

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deseq2 update

9.3 years ago zshao1 • 0

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5.5k

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update bioclite

updated 9.5 years ago by Dan Tenenbaum ★ 8.2k • written 9.5 years ago by dianmante • 0

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1.5k

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experimentdata update

updated 9.6 years ago by Laurent Gatto 1.6k • written 9.6 years ago by paul.theodor.pyl ▴ 10

14 results • Page 1 of 1

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Comment: Different Shrunk Log2FC according with reference by Michael Love 41k

I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Votes

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Awards • All

Scholar to ATpoint ★ 4.0k