Bioconductor Update

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bioconductor biocupgrade upgrade update bioclite

7.9 years ago enricoferrero ▴ 660

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5.5k

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update bioclite

updated 9.5 years ago by Dan Tenenbaum ★ 8.2k • written 9.5 years ago by dianmante • 0

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783

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support.bioconductor.org update News

5.3 years ago shepherl 3.8k

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biocmanager valid update packages

updated 3.9 years ago by Kevin Blighe ★ 3.9k • written 3.9 years ago by bs14ab • 0

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1.5k

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experimentdata update

updated 9.5 years ago by Laurent Gatto 1.6k • written 9.5 years ago by paul.theodor.pyl ▴ 10

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6.5k

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deseq2 update

9.3 years ago zshao1 • 0

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2.0k

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biocLite update all default ask

updated 5.2 years ago by Fischer-philipp ▴ 30 • written 5.2 years ago by rgiannico ▴ 10

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1.9k

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installation update

updated 7.2 years ago by James W. MacDonald 65k • written 7.2 years ago by debg • 0

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1.1k

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PANTHER.db update annotation go

updated 5.2 years ago by Martin Morgan 25k • written 5.2 years ago by alfonsosaera • 0

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473

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Versions Update BindingSiteFinder

updated 15 months ago by Mike Smith ★ 6.5k • written 15 months ago by M.Klostermann • 0

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649

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update new release version

4.6 years ago zzrickli • 0

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1.3k

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software error packages update

updated 3.7 years ago by James W. MacDonald 65k • written 3.7 years ago by bs14ab • 0

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1.2k

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update Omixer maintainer

updated 3.4 years ago by shepherl 3.8k • written 3.4 years ago by l.j.sinke • 0

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867

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bioclite package installation update

7.1 years ago Malcolm Cook ★ 1.6k

14 results • Page 1 of 1

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Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…

Answer: Differentially expressed genes in monocle pseudotime by Gordon Smyth 50k

You might try the methods in this paper: Cheng J, Smyth GK*, Chen Y* (2023). Unraveling the timeline of gene expression: A pseudotempora…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you Michael for your attention to my question. I am truly grateful. I subsetted the data using lines of codes to include only the g…

Comment: [DiffBind] Obtaining normalization factors by Henry ▴ 10

I see, thank you for your suggestion! I managed to use a separate RLE normalization to obtain the size factors.

Answer: Memory errors using read.bismark? by Peter Hickey ▴ 690

Thanks for sharing an example file. This is a very large non-CpG methylation dataset, which are tricky to work with for a number of reason…

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Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA

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