Bioconductor VCFArray

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samtools tabix VariantAnnotation VCFArray

updated 3.8 years ago by Vincent J. Carey, Jr. 6.7k • written 3.9 years ago by naive • 0

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VCFArray maftools

17 months ago Bogdan ▴ 670

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VCFArray

12 weeks ago patrice.bridges457 • 0

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

That's true. We haven't yet developed the Oarfish to tximeta pipeline yet. Can you say what functionality you need? Do you want to do test…

Comment: Error using useMart or useEnsembl by James W. MacDonald 67k

I hit Enter early on my original response - if you want to read the rest, please come to the support site.

Answer: Error using useMart or useEnsembl by James W. MacDonald 67k

The acid test is trying to load https://ensembl.org/biomart/martview in a browser. Which isn't happening right now, so you know for sure th…

Answer: Error in download.file for TCGAutils::symbolsToRanges by James W. MacDonald 67k

That's a valid URI, so it is likely that you just need more time for the download. You can do `options(timeout = 2000)` or some similarly l…

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Lol I'm not smart This solution didn't work because....the column name was wrong updated_m <- mcols(y) %>% as.data.frame() %…

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Answer: Limma Interaction Effect with Covariates

A: Processing agilent data by limma

A: Linear regression in DESeq2

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