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VariantFiltering
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Variant Filtering on very large VCF files
VariantAnnotation
VariantFiltering
6 months ago
Bogdan
▴ 670
0
votes
1
reply
318
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VariantFiltering error
VariantFiltering
updated 9 months ago by
Robert Castelo
★ 3.1k • written 9 months ago by
Andrew Beggs
▴ 90
0
votes
1
reply
1.4k
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Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 16 months ago by
James W. MacDonald
65k • written 16 months ago by
Mohamed
▴ 30
0
votes
3
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1.4k
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library VaraintFiltration looking for explanation of pedigree file
bioconductor
variantfiltering
6.6 years ago
Claus.Hultschig
• 0
3
votes
2
replies
1.4k
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filtering VCF files
variantannotation
variantfiltering
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.1k
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Problems with autosomalRecessiveHomozygous
VariantFiltering
8.7 years ago
claire.simpson
• 0
4
votes
0
replies
1.5k
views
News:
Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing
transcription
variantfiltering
annotation
News
8.8 years ago
Matthew Ritchie
▴ 1000
1
vote
1
reply
1.3k
views
retrieving phastConsScores via 'scores' from 'VariantFiltering' shows inconsistency
variantfiltering
phastcons
updated 8.9 years ago by
Robert Castelo
★ 3.1k • written 8.9 years ago by
Stefanie Tauber
▴ 40
0
votes
0
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1.7k
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problems installing VariantFiltering package
VariantFiltering
VariantFiltering
9.9 years ago
Robert Castelo
★ 3.1k
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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