Showing : Visualization • reset
11
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0
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5.8k
views
Tutorial: Introduction to Bioconductor for high-throughput sequence analysis
GenomicRanges Annotation RNAseq visualization Tutorial
8.8 years ago Martin Morgan 25k
8
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12
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8.7k
views
EdgeR: Explaning dispersion types to newbies
edger dispersion estimatedispersions visualization teaching
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 20
8
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0
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3.6k
views
Tutorial: Statistics and Computing in Genome Science (CSAMA) Course Material
rnaseq chipseq visualization metagenomics proteomics Tutorial
8.8 years ago Martin Morgan 25k
7
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0
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3.7k
views
Tutorial: New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation genomicranges visualization docker shiny Tutorial
8.1 years ago Vincent J. Carey, Jr. 6.7k
5
votes
11
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1.5k
views
Visualization tool for GC-bias in SE data?
GC-bias ALPINE visualization
updated 3.8 years ago by 41k • written 3.8 years ago by ▴ 20
5
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11
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2.9k
views
Visualization of negative log CPM values
Visualization Normalization ggplot2 edgeR
written 11 months ago by ▴ 20
4
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6
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1.4k
views
How to best visualize multi-level transcriptomics experiment data?
ggplot2 Transcriptomics Visualization R limma
23 months ago mohammedtoufiq91 ▴ 10
3
votes
3
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1.1k
views
how to plot trends for differentialy expressed genes from normalized count matrix (EdgeR)
edger clustering visualization
updated 5.6 years ago by 65k • written 5.6 years ago by ▴ 10
3
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0
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1.7k
views
News: BioCAsia, 8 Sept 2015, Tokyo
sequencing transcription epigenomics visualization infrastructure News
8.8 years ago • updated 8.7 years ago Matthew Ritchie ▴ 1000
3
votes
5
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2.3k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview clusterProfiler KEGGpath visualization Graphviz
updated 8.4 years ago by ★ 1.6k • written 8.5 years ago by ▴ 830
2
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0
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1.2k
views
Interactive Visualization with Epivizr (what's new in this release)
epivizr visualization
9.5 years ago Hector Corrada Bravo ▴ 60
2
votes
2
replies
4.2k
views
How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2 clusterprofiler visualization gseGo
7.0 years ago • updated 3.4 years ago tcalvo ▴ 90
2
votes
2
replies
1.1k
views
What can be done to separate the healthy and patient samples in PCA plot and Distance matrix
deseq2 PCAplot Visualization
updated 5.3 years ago by 41k • written 5.3 years ago by • 0
2
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1
reply
3.5k
views
Heatmap function
Visualization Visualization
updated 20.5 years ago by ▴ 210 • written 20.5 years ago by ▴ 150
2
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4
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1.6k
views
chimeraviz - import own fusion file for visualization
visualization chimeraviz
updated 2.7 years ago by • 0 • written 6.8 years ago by ▴ 10
2
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2
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1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 10
2
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1
reply
2.1k
views
ggbio: examples of overlaying multiple assay datasets
ggbio visualization ggbio
updated 9.6 years ago by ▴ 30 • written 9.6 years ago by ▴ 190
1
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0
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1.9k
views
Job: PhD position - Heidelberg: Bioinformatic analysis of high-throughput and image-based RNAi screening data
high-throughput screening RNAi image analysis data integration visualization Job
9.1 years ago e.schmidt ▴ 10
1
vote
0
replies
940
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SIM new package for Statistical Integration of Microarrays
SNP Microarray Visualization Cancer SNP Microarray Visualization Cancer
15.6 years ago Maarten van Iterson ▴ 60
1
vote
1
reply
1.1k
views
News: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview pathways SBGNview.data pathview visualization
3.1 years ago Luo Weijun ★ 1.6k
1
vote
2
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1.2k
views
Package for custom visualization of multiple sequence alignment
MSA visualization
updated 5.5 years ago by ▴ 20 • written 5.5 years ago by • 0
1
vote
3
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1.7k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 3.4 years ago by ▴ 190 • written 3.5 years ago by • 0
1
vote
3
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1.9k
views
Visualizing gene counts and variance stabilization
deseq2 rnaseq variancestabilizingtransformation visualization
updated 8.9 years ago by 41k • written 8.9 years ago by ▴ 40
1
vote
0
replies
1.5k
views
News: BioCAsia, 4th November 2016, Brisbane, Australia
conference transcription epigenomics visualization infrastructure News
7.8 years ago Matthew Ritchie ▴ 1000
1
vote
1
reply
1.4k
views
Visualizing Structural variants
visualization SV
updated 9.0 years ago by 6.7k • written 9.0 years ago by ▴ 190
1
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1
reply
2.3k
views
Using DESeq2: experimental design and extracting results
Visualization DESeq DESeq2 Visualization DESeq DESeq2
updated 9.7 years ago by 41k • written 9.7 years ago by ▴ 60
1
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0
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1.7k
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Pathview and GAGE now work with essentially all KEGG species
Visualization gage pathview Visualization gage pathview
10.5 years ago Luo Weijun ★ 1.6k
1
vote
2
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2.7k
views
gene expression visualization: lineplot with ggplot2
ggplot2 lineplot visualization
updated 8.9 years ago by ▴ 180 • written 8.9 years ago by ▴ 130
0
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0
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1.3k
views
visualizing limma results
Visualization limma Visualization limma
18.3 years ago daniela.marconi@libero.it ▴ 100
0
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0
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821
views
Bug in maNormNN
Microarray Normalization GO Visualization Network nnNorm Microarray Normalization GO
18.4 years ago Tarca, Adi ▴ 570
0
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1
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1.0k
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Several questions goCluster and GOstats...
Annotation GO Visualization Yeast goCluster Annotation GO Visualization Yeast goCluster
updated 18.7 years ago by ▴ 60 • written 18.7 years ago by ▴ 140
0
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0
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714
views
last call, registrations for Boston Bioconductor Training, 21-23 July 2005
Annotation Preprocessing Visualization Annotation Preprocessing Visualization
18.8 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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1.0k
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Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
20.5 years ago Wolfgang Huber ★ 13k
0
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0
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1.2k
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Bioconductor 2.9 is released
Transcription Sequencing miRNA qPCR Proteomics Annotation Normalization Visualization cdf
12.5 years ago Dan Tenenbaum ★ 8.2k
0
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1
reply
716
views
comparative genomics
Visualization Visualization
updated 18.9 years ago by 21k • written 18.9 years ago by ▴ 30
0
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0
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688
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Boston Bioc Training July 2005 Registration open
Annotation Preprocessing Visualization Annotation Preprocessing Visualization
18.9 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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1.3k
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InfoVis 2003 Call for Papers
Visualization PROcess Category Visualization PROcess Category
21.2 years ago rgentleman ★ 5.5k
0
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0
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792
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Bioc Training: 21-23 July 2005, Boston
Annotation Preprocessing Visualization Annotation Preprocessing Visualization
18.9 years ago Vincent J. Carey, Jr. 6.7k
0
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1
reply
1.0k
views
status of visnab
Visualization ggbio Gviz Visualization ggbio Gviz
updated 11.0 years ago by ▴ 420 • written 11.0 years ago by ▴ 410
0
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2
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900
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ANN: Bioconductor short course June 1-3 in Seattle
Preprocessing Visualization Cancer Preprocessing Visualization Cancer
19.1 years ago Seth Falcon ★ 7.4k
0
votes
0
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1.1k
views
qPCR 2009 Event Agenda Online
SNP qPCR Normalization Visualization Regression Cancer probe microRNA SNP qPCR Cancer
15.2 years ago qPCR Platform - the reference in real-t… ▴ 170
0
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0
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970
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in case you have a visualization paper to submit
Microarray Alignment Pathways Visualization Microarray Alignment Pathways Visualization
17.1 years ago Vincent J. Carey, Jr. 6.7k
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
0
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1
reply
2.0k
views
Entrez Gene ID to Probe Set Name
aCGH Sequencing miRNA Microarray Annotation Normalization GO Preprocessing Visualization
updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 300
0
votes
0
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602
views
Problem loadin repsTools
Visualization affy Visualization affy
19.1 years ago Zhi-Wei Lu ▴ 10
0
votes
1
reply
839
views
Visualization of multiple alignments in bioconductor
Genetics Visualization Genetics Visualization
updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Color in the lefs of a dendrogram?
Visualization Clustering Visualization Clustering
updated 19.5 years ago by ▴ 330 • written 19.5 years ago by ▴ 270
0
votes
0
replies
1.2k
views
Talk & Poster Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
15.4 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
1
reply
1.3k
views
Talk & Poster - Final Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
15.4 years ago • updated 15.3 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
0
replies
1.3k
views
job advertisement
Genetics Alignment Visualization Genetics Alignment Visualization
10.8 years ago Zhenyu Xu ▴ 10
50 results • Page 1 of 1
Recent ...
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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0
Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …
Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by Tim Peters ▴ 170
Hi Jose and Russ, Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …
Comment: Trying to use enrichGO by fernanda.backsouza • 0
Sure, I changed it but still NULL G0 <- enrichGO( gene = ortologos_filtrados$Gene.ID, OrgDb = org.Cs.eg.db, keyType = "ENTREZID",…
Answer: limma-voom: Calculate the log-fold change in gene expression within a sample by Gordon Smyth 50k
No, you cannot use residuals to compute logFCs. From the information you give, I guess that you need to add individual-specific condition …
Comment: Error EPICv2 ChAMP by James W. MacDonald 65k
You don't need to do either of the above suggestions. ``` library(BiocManager) install("YuanTian1991/ChAMPdata") ``` will install without…
Votes
Comment: Cannabis and KEGGgraph
Comment: Cannabis and KEGGgraph
Answer: Cannabis and KEGGgraph
Answer: Differentially expressed genes in monocle pseudotime
Answer: DESeq2 - dispersion estimation when there is none
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