Bioconductor WALD

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940

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DESeq2 wald stat

updated 19 months ago by Peter Hickey ▴ 740 • written 19 months ago by eve.olszanowski • 0

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1.5k

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etLRT WALD edgeR DESEq

updated 2.7 years ago by Michael Love 41k • written 2.7 years ago by aiswaryabioinfo • 0

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691

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deseq2 LRT wald

updated 4.1 years ago by Kevin Blighe ★ 3.9k • written 4.1 years ago by jnaviapelaez ▴ 10

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985

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GENESIS zscore wald

updated 4.5 years ago by Stephanie M. Gogarten ▴ 870 • written 4.5 years ago by lassana.a.samarakoon ▴ 10

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1.8k

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deseq2 LRT WALD

updated 4.7 years ago by Michael Love 41k • written 4.7 years ago by annesoalvarez • 0

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1.2k

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deseq2 ribosome profiling wald lrt

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by indrik.wijaya ▴ 20

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4.0k

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rnaseq deseq2 lrt wald differential gene expression

updated 2.1 years ago by krushnach80 • 0 • written 6.6 years ago by chrysanthi.taxiarchi12 • 0

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2.6k

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deseq2 wald lrt genes significance

updated 7.9 years ago by Michael Love 41k • written 7.9 years ago by aziza ▴ 20

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18k

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deseq2 wald

updated 2.5 years ago by Michael Love 41k • written 9.2 years ago by deena ▴ 20

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Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Answer: List of Deprecated Packages for Bioc3.19 by shepherl 3.8k

singleCellTK has been fixed and will remain in Bioconductor

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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