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799

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DESeq2 LRT Wald

updated 7 months ago by James W. MacDonald 68k • written 7 months ago by Eric • 0

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1.3k

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DESeq2 wald stat

updated 2.5 years ago by Peter Hickey ▴ 750 • written 2.5 years ago by eve.olszanowski • 0

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4.5k

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rnaseq deseq2 lrt wald differential gene expression

updated 3.0 years ago by chm • 0 • written 7.5 years ago by chrysanthi.taxiarchi12 • 0

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20k

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deseq2 wald

updated 3.4 years ago by Michael Love 43k • written 10.1 years ago by deena ▴ 20

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2.0k

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etLRT WALD edgeR DESEq

updated 3.6 years ago by Michael Love 43k • written 3.6 years ago by aiswaryabioinfo • 0

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970

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deseq2 LRT wald

updated 5.0 years ago by Kevin Blighe ★ 4.0k • written 5.0 years ago by jnaviapelaez ▴ 10

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1.3k

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GENESIS zscore wald

updated 5.5 years ago by Stephanie M. Gogarten ▴ 890 • written 5.5 years ago by lassana.a.samarakoon ▴ 10

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2.2k

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deseq2 LRT WALD

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by annesoalvarez • 0

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1.5k

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deseq2 ribosome profiling wald lrt

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by indrik.wijaya ▴ 20

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3.0k

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deseq2 wald lrt genes significance

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by aziza ▴ 20

10 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

A: use tximport's countsFromAbundance when using DESeq2

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