Bioconductor WALD

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18k

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deseq2 wald

updated 2.4 years ago by Michael Love 41k • written 9.1 years ago by deena ▴ 20

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4.0k

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rnaseq deseq2 lrt wald differential gene expression

updated 2.1 years ago by krushnach80 • 0 • written 6.6 years ago by chrysanthi.taxiarchi12 • 0

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2.6k

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deseq2 wald lrt genes significance

updated 7.8 years ago by Michael Love 41k • written 7.8 years ago by aziza ▴ 20

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1.8k

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deseq2 LRT WALD

updated 4.7 years ago by Michael Love 41k • written 4.7 years ago by annesoalvarez • 0

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1.5k

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etLRT WALD edgeR DESEq

updated 2.7 years ago by Michael Love 41k • written 2.7 years ago by aiswaryabioinfo • 0

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1.2k

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deseq2 ribosome profiling wald lrt

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by indrik.wijaya ▴ 20

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977

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GENESIS zscore wald

updated 4.5 years ago by Stephanie M. Gogarten ▴ 870 • written 4.5 years ago by lassana.a.samarakoon ▴ 10

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932

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DESeq2 wald stat

updated 19 months ago by Peter Hickey ▴ 740 • written 19 months ago by eve.olszanowski • 0

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687

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deseq2 LRT wald

updated 4.1 years ago by Kevin Blighe ★ 3.9k • written 4.1 years ago by jnaviapelaez ▴ 10

9 results • Page 1 of 1

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Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

Answer: rlog transformation by Michael Love 41k

It is dependent on the other samples in the dataset.

Votes

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

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Popular Question to W. Evan Johnson ▴ 850

Popular Question to Alejandro Reyes ★ 1.9k