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WGCNA package
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1
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0
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942
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WGCNA trait order in heat map
wgcna
WGCNA
wgcna package
4.2 years ago
coyoung
▴ 10
0
votes
2
replies
2.4k
views
Module preservation WGCNA
wgcna
wgcna package
modulepreservation
updated 5.4 years ago by
Peter Langfelder
★ 3.0k • written 5.4 years ago by
bekah
▴ 40
0
votes
1
reply
1.9k
views
WGCNA: Matching eigengenes to samples
wgcna
wgcna package
5.4 years ago
Jack
• 0
0
votes
2
replies
1.2k
views
Using Kendall's Tau rank correlation coefficient for creating WGCNA network
wgcna package
wgcna
5.5 years ago
anni.djurhuus
• 0
2
votes
3
replies
1.4k
views
Problem for finding "Locus Link ID" from Annotation file
wgcna package
TCGA
LocusLinkID
genecode
ensembl
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
modarzi
▴ 10
0
votes
2
replies
3.1k
views
TOMplot error: "color" is not a graphical parameter (WGCNA)
wgcna package
software error
updated 5.5 years ago by
Peter Langfelder
★ 3.0k • written 5.5 years ago by
giuseppe0525
• 0
0
votes
0
replies
1.0k
views
consensus module relationship
wgcna
wgcna package
consensus
5.6 years ago
2323982403
▴ 60
2
votes
4
replies
1.5k
views
Segfault error when loading WGCNA
wgcna
wgcna package
5.6 years ago
antoinefelden
▴ 10
2
votes
2
replies
4.8k
views
WGCNA extract genes from a module
WGCNA
wgcna package
updated 5.7 years ago by
Peter Langfelder
★ 3.0k • written 5.7 years ago by
bdy8
▴ 10
1
vote
3
replies
1.3k
views
SampleNetwork in WGCNA
wgcna
wgcna package
5.7 years ago
2323982403
▴ 60
0
votes
0
replies
2.3k
views
Use of bicor in WGCNA
WGCNA
wgcna package
wgcna
bicor
5.7 years ago
bekah
▴ 40
12
votes
15
replies
14k
views
WGCNA: Understanding module-trait correlations
wgcna package
updated 5.7 years ago by
Peter Langfelder
★ 3.0k • written 5.7 years ago by
bekah
▴ 40
0
votes
0
replies
824
views
problem for finding soft power for constructing network in WGCNA algorithm
RNA-seq
WGCNA package
soft power
5.8 years ago
modarzi
▴ 10
13 results • Page
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Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…
Comment: DESeq2 setting significant p-value
by
Dev
• 0
Sir but when I put in the expression data via the csv file, it was showing the gene names then but now when i set it in the form factor it …
Answer: OrgDb for maize
by
James W. MacDonald
65k
``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…
Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
• 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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