Bioconductor WGCNA

Showing : WGCNA • reset

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WGCNA

written 12 months ago by mauricio.microbiol • 0

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167

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Voom Limma WGCNA

21 days ago • updated 20 days ago Gimena • 0

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211

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Regression WGCNA

26 days ago • updated 21 days ago w.cookson • 0

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1.1k

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BatchEffect RNASeqData WGCNA DESeq2

updated 6 days ago by Ashley • 0 • written 10 months ago by zxc741xb • 0

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7.3k

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WGCNA Theory Scale-Free Topology

updated 5 days ago by Garrett • 0 • written 9.1 years ago by brohawndg ▴ 150

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Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…

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Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

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Scholar to ATpoint ★ 4.0k