Showing : XCMS • reset
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2
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1.2k
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Error: BiocParallel errors
xcms msdata BiocParallel
7 months ago mavamay • 0
0
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0
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400
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mzTab-M in XCMS
xcms mzTab-M iterativehierarchicalprocessing FBMN
10 months ago Abrianna • 0
0
votes
1
reply
449
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms mzR
updated 12 months ago by ★ 4.0k • written 12 months ago by • 0
0
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0
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365
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XCMS normalization
xcms
14 months ago T.RU • 0
0
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1
reply
596
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msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 14 months ago by • 0 • written 18 months ago by ▴ 10
0
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0
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428
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dont find xcmsSet for peak analysis
xcms
18 months ago aline.lafise • 0
0
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0
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656
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xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO msdata xcms
24 months ago mba • 0
5
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5
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1.0k
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Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms Spectra
updated 2.1 years ago by ★ 2.0k • written 2.1 years ago by ▴ 20
0
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3
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1.3k
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Warning messages during intallation of XCMS
xcms Install
updated 2.1 years ago by 65k • written 2.2 years ago by • 0
0
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0
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635
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BiocParallel errors in XCMS peak-picking
BiocParallel xcms biocparallel
2.4 years ago noerman • 0
0
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4
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14k
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hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 20 months ago by 65k • written 2.7 years ago by • 0
0
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2
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1.3k
views
colMax is not exported from the xcms package
xcms
2.9 years ago Habil Zare ▴ 200
0
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0
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664
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Mass spec intensity difference
xcms
3.0 years ago Phytochem • 0
0
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0
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669
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Running > 100 samples per group - memory issues
xcms memory findchrompeaks
3.0 years ago abrsoule ▴ 30
0
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0
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1.4k
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BiocParallel errors with xcms
BiocParallel xcms
3.1 years ago Yuki ▴ 10
1
vote
3
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972
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Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 3.4 years ago by ★ 2.0k • written 3.4 years ago by ▴ 10
1
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4
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1.4k
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 21 months ago by • 0 • written 3.5 years ago by ▴ 30
0
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1
reply
1.3k
views
convert from profile to centroid.
MassSpectrometry xcms
updated 3.5 years ago by 1.6k • written 3.5 years ago by • 0
0
votes
3
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1.1k
views
Use xcms but mzR occurs error
software error xcms
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by • 0
0
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4
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1.4k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 3.7 years ago by 1.6k • written 3.7 years ago by • 0
3
votes
2
replies
819
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 3.8 years ago by ★ 2.0k • written 3.8 years ago by ▴ 30
1
vote
2
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1.1k
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Baseline correction for GC-MS data
XCMS metaMS
updated 3.9 years ago by ▴ 20 • written 3.9 years ago by ▴ 30
0
votes
3
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1.4k
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 4.0 years ago by ★ 2.0k • written 4.0 years ago by • 0
2
votes
13
replies
2.0k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms adjustRtime parameters scantime error biocparallel error
4.6 years ago abrsoule ▴ 30
0
votes
5
replies
1.3k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 4.6 years ago by 1.6k • written 4.6 years ago by • 0
2
votes
6
replies
1.6k
views
xcms centwave roiList error
roiList xcms centwave XIC
updated 4.7 years ago by ★ 2.0k • written 4.7 years ago by ▴ 10
0
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1
reply
1.2k
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
4.7 years ago garfield320 ▴ 30
2
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1
reply
1.1k
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
5.1 years ago abrsoule ▴ 30
0
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4
replies
2.8k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
5.1 years ago lmg • 0
0
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0
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1.0k
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
5.2 years ago Johannes Rainer ★ 2.0k
0
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0
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1.3k
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 5.3 years ago by • 0 • written 5.4 years ago by ★ 2.0k
0
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4
replies
1.3k
views
Intensity discrepancy between raw data and XCMS output
xcms xcmsset intensity
5.6 years ago cpataki • 0
0
votes
9
replies
2.9k
views
Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
5.7 years ago goh • 0
3
votes
1
reply
943
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 5.7 years ago by 1.6k • written 5.7 years ago by • 0
0
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1
reply
1.5k
views
XCMS for GC-MS
xcms GC-MS
5.7 years ago Joe • 0
0
votes
4
replies
1.8k
views
Chromatographic peak detection failed for all files
xcms
5.8 years ago yuchiu • 0
0
votes
1
reply
1.5k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 6.0 years ago by ★ 2.0k • written 6.0 years ago by • 0
2
votes
4
replies
1.2k
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
6.1 years ago james.dalgleish ▴ 30
1
vote
2
replies
2.9k
views
ReadMSData problem with xcms
xcms readmsdata
updated 6.4 years ago by ★ 2.0k • written 6.4 years ago by ▴ 30
1
vote
5
replies
3.1k
views
'names' attribute [12] must be the same length as the vector [6]
R xcms vector
6.5 years ago bhgyu ▴ 30
5
votes
7
replies
2.3k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 6.5 years ago by ★ 2.0k • written 6.5 years ago by ▴ 30
0
votes
2
replies
1.2k
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 6.8 years ago by 1.6k • written 6.8 years ago by • 0
0
votes
0
replies
984
views
xcmsFragments extract product fragment
xcms xcms2
6.8 years ago riccardo.romoli • 0
0
votes
1
reply
1.5k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 7.1 years ago by 50k • written 7.1 years ago by • 0
1
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1
reply
1.2k
views
xcms warning message
R xcms warning message
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
0
votes
1
reply
1.3k
views
error when reading .mzML with xcms::xcmsSet
software error R mzR xcms
7.4 years ago buescher • 0
1
vote
7
replies
2.2k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
0
votes
1
reply
1.1k
views
get LCMS masses with more significant figures
source code xcms m/z groupval xcmsSet
updated 7.5 years ago by ★ 2.0k • written 7.5 years ago by • 0
0
votes
1
reply
1.4k
views
findneutral xcms xcmsSet
R metabolomics LC-MS xcms readMzXmlData
updated 7.5 years ago by 65k • written 7.5 years ago by • 0
0
votes
1
reply
1.6k
views
metaMS for analysis of GC-MS data
metaMS xcms GC-MS metabolomics volatile organic compounds
updated 7.9 years ago by ▴ 20 • written 7.9 years ago by • 0
50 results • Page 1 of 1
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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