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XVector
•
reset
5
votes
4
replies
2.6k
views
XVector installation fails because zlib.h is not found
XVector
docker
Install
2.4 years ago
RobKo
▴ 10
2
votes
2
replies
2.0k
views
Error in installation of scran
S4Vectors
IRanges
XVector
GenomicRanges
scran
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
Momo
• 0
2
votes
1
reply
688
views
is check=FALSE safe in compact()?
XVector
updated 3.2 years ago by
Martin Morgan
25k • written 3.2 years ago by
robmaz77
▴ 20
2
votes
5
replies
4.4k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 6.9 years ago by
Hervé Pagès
16k • written 6.9 years ago by
Sophie
• 0
1
vote
6
replies
4.4k
views
ERROR: compilation failed for package XVector
XVector
XVector
updated 10.8 years ago by
Hervé Pagès
16k • written 10.8 years ago by
Pengcheng Yang
▴ 60
0
votes
2
replies
1.2k
views
VariantAnnotation::locateVariants error coming from XVector
variantannotation
xvector
iranges
5.9 years ago
Vivek.b
▴ 100
0
votes
15
replies
2.0k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor
iranges
s4vectors
xvector
r 3.3.2
updated 5.8 years ago by
becker.gabriel
▴ 10 • written 5.8 years ago by
chokoiboko
• 0
0
votes
3
replies
671
views
Extracting values from out-of-bounds Rle Views
IRanges
XVector
AtomicList
written 22 months ago by
Pierre-Luc Germain
▴ 20
0
votes
0
replies
849
views
Suggestion for a regression test in XVector
xvector
7.0 years ago
Charles Plessy
▴ 180
0
votes
7
replies
2.1k
views
VariantTools installation problem: dependencies not available
IRanges
GenomicRanges
VariantTools
XVector
IRanges
GenomicRanges
VariantTools
XVector
updated 10.5 years ago by
Michael Lawrence
★ 11k • written 10.5 years ago by
heyi xiao
▴ 360
0
votes
0
replies
1.3k
views
XVector
Cancer
XVector
9.6 years ago
Hervé Pagès
16k
0
votes
0
replies
1.1k
views
回复: XVector
Network
Cancer
IRanges
XVector
9.6 years ago
Hervé Pagès
16k
0
votes
5
replies
2.2k
views
Problem installing XVector package
software error
gcrma
Xvector
iranges
7.7 years ago
gary_smith
• 0
13 results • Page
1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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65k
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JKim
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to
Gordon Smyth
50k
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