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Xvector
•
reset
0
votes
3
replies
671
views
Extracting values from out-of-bounds Rle Views
IRanges
XVector
AtomicList
written 22 months ago by
Pierre-Luc Germain
▴ 20
5
votes
4
replies
2.6k
views
XVector installation fails because zlib.h is not found
XVector
docker
Install
2.4 years ago
RobKo
▴ 10
2
votes
1
reply
687
views
is check=FALSE safe in compact()?
XVector
updated 3.2 years ago by
Martin Morgan
25k • written 3.2 years ago by
robmaz77
▴ 20
2
votes
2
replies
2.0k
views
Error in installation of scran
S4Vectors
IRanges
XVector
GenomicRanges
scran
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
Momo
• 0
0
votes
15
replies
2.0k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor
iranges
s4vectors
xvector
r 3.3.2
updated 5.8 years ago by
becker.gabriel
▴ 10 • written 5.8 years ago by
chokoiboko
• 0
0
votes
2
replies
1.2k
views
VariantAnnotation::locateVariants error coming from XVector
variantannotation
xvector
iranges
5.9 years ago
Vivek.b
▴ 100
2
votes
5
replies
4.4k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 6.9 years ago by
Hervé Pagès
16k • written 6.9 years ago by
Sophie
• 0
0
votes
0
replies
849
views
Suggestion for a regression test in XVector
xvector
7.0 years ago
Charles Plessy
▴ 180
0
votes
5
replies
2.2k
views
Problem installing XVector package
software error
gcrma
Xvector
iranges
7.7 years ago
gary_smith
• 0
0
votes
0
replies
1.1k
views
回复: XVector
Network
Cancer
IRanges
XVector
9.6 years ago
Hervé Pagès
16k
0
votes
0
replies
1.3k
views
XVector
Cancer
XVector
9.6 years ago
Hervé Pagès
16k
0
votes
7
replies
2.1k
views
VariantTools installation problem: dependencies not available
IRanges
GenomicRanges
VariantTools
XVector
IRanges
GenomicRanges
VariantTools
XVector
updated 10.5 years ago by
Michael Lawrence
★ 11k • written 10.5 years ago by
heyi xiao
▴ 360
1
vote
6
replies
4.4k
views
ERROR: compilation failed for package XVector
XVector
XVector
updated 10.8 years ago by
Hervé Pagès
16k • written 10.8 years ago by
Pengcheng Yang
▴ 60
13 results • Page
1 of 1
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Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
James W. MacDonald
65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Votes
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
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