updated 3.8 years ago by
Michael Love
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written 3.8 years ago by
rory.kirchner
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Comment: regression analysis for epic array methylation data using limma
by
nabiyogesh
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Thanks Basti, I am trying to use limma, but not sure how to mention logeGFR and covariates in model?
var<-model.matrix(~logeGFR + as.…
Answer: regression analysis for epic array methylation data using limma
by
Basti
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280
Which package do you intend to use ? There are many tutorials in packages vignette that show you how to perform differential methylation an…
Comment: scRNASeq reference at a transcript level
by
Basti
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280
I believe this question is not related to any Bioconductor package, I think the only solution to this question is to search yourself in Pub…
Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
by
andrebolerbarros
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10
Upgrading the package solved the issue, thanks!
Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2
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ATpoint
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The error comes from the `mixsqp` package, see https://github.com/stephens999/ashr/issues/131. Upgrading the package to the most recent 0.3…
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