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a4
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BIRD 2008
Genetics
Pathways
Cancer
PROcess
microRNA
a4
Genetics
Pathways
Cancer
PROcess
microRNA
16.5 years ago • updated 16.4 years ago
Prof. Roland Wagner
▴ 100
0
votes
2
replies
1.5k
views
read.ilmn function query
probe
limma
a4
probe
limma
a4
updated 12.8 years ago by
Gordon Smyth
50k • written 12.8 years ago by
Natasha
▴ 440
0
votes
0
replies
1.0k
views
HTqPCR, changeCtLayout is mislabeling the rows and is unable to return a qPCRset object
a4
a4
11.3 years ago
Guest User
★ 13k
0
votes
1
reply
1.0k
views
calcNormFactors gives me NaN
RNASeq
edgeR
a4
RNASeq
edgeR
a4
updated 10.3 years ago by
Ryan C. Thompson
★ 7.9k • written 10.3 years ago by
Guest User
★ 13k
0
votes
0
replies
969
views
Design question in LIMMA
Normalization
limma
a4
Normalization
limma
a4
18.4 years ago
Nataliya Yeremenko
▴ 100
0
votes
0
replies
904
views
technical replicates (different subset repeated on different print runs within experiment)
a4
a4
18.6 years ago
Margaret Gardiner-Garden
▴ 160
0
votes
0
replies
944
views
Design question in LIMMA
Normalization
limma
a4
Normalization
limma
a4
18.4 years ago
Gordon Smyth
50k
0
votes
3
replies
1.8k
views
"scale to fit" plot for A4 pdf
Cancer
a4
Cancer
a4
updated 17.1 years ago by
James W. MacDonald
65k • written 17.1 years ago by
Daniel Brewer
★ 1.9k
0
votes
5
replies
1.8k
views
Extremely low p-values in limma
limma
a4
limma
a4
updated 16.6 years ago by
Naomi Altman
★ 6.0k • written 16.6 years ago by
Pie Muller
▴ 110
0
votes
0
replies
784
views
Make a "subset" back
Normalization
GO
a4
Normalization
GO
a4
15.6 years ago
pchristoph@gmail.com
▴ 20
0
votes
2
replies
1.2k
views
biological reps and dye-swaps and duplicate spots in a common reference design
Yeast
limma
a4
Yeast
limma
a4
updated 15.4 years ago by
Jenny Drnevich
★ 2.0k • written 15.4 years ago by
sylvie pinloche
▴ 10
0
votes
1
reply
1.3k
views
maSigPro error in getting a design matrix
maSigPro
a4
maSigPro
a4
14.5 years ago
lohith madireddy
▴ 40
0
votes
0
replies
1.2k
views
maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
limma
maSigPro
a4
limma
maSigPro
a4
14.5 years ago
jeremy wilson
▴ 150
0
votes
1
reply
1.3k
views
Fwd: maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
Annotation
limma
maSigPro
a4
Annotation
limma
maSigPro
a4
updated 14.4 years ago by
jeremy wilson
▴ 150 • written 14.4 years ago by
Ana Conesa
▴ 340
0
votes
3
replies
1.3k
views
LIMMA experimental design affecting modelmatrix
Microarray
limma
a4
Microarray
limma
a4
updated 14.4 years ago by
James W. MacDonald
65k • written 14.4 years ago by
Aubin-Horth Nadia
▴ 60
0
votes
1
reply
1.4k
views
HTqPCR - how to read data file with multiple samples
HTqPCR
a4
HTqPCR
a4
updated 14.2 years ago by
Heidi Dvinge
★ 2.0k • written 14.2 years ago by
marco fabbri
▴ 320
0
votes
0
replies
1.1k
views
Limma analysis questions
limma
a4
limma
a4
12.6 years ago
Martin Janssen
▴ 10
0
votes
2
replies
1.2k
views
Problems normalizing scanarray express data with limma
GUI
limma
a4
GUI
limma
a4
updated 12.3 years ago by
Gordon Smyth
50k • written 12.3 years ago by
Matthew Ouellette
▴ 10
0
votes
1
reply
741
views
Bioconductor IT Security polici
a4
a4
updated 11.9 years ago by
Martin Morgan
25k • written 11.9 years ago by
Guest User
★ 13k
0
votes
0
replies
986
views
DiffBind error with DBA_DESEQ_GLM and warning with DBA_EDGE_GLM
a4
DiffBind
a4
DiffBind
11.8 years ago
Elisabetta Manduchi
▴ 160
0
votes
0
replies
1.5k
views
Biorad iCycler cfx manager files and HTqPCR
Microarray
qPCR
HTqPCR
a4
Microarray
qPCR
HTqPCR
a4
11.2 years ago
b1gorsuch@comcast.net
▴ 20
0
votes
1
reply
1.2k
views
calcNormFactors gives NaN normalization values- Please Help!
Normalization
a4
Normalization
a4
updated 10.3 years ago by
Mark Robinson
▴ 880 • written 10.3 years ago by
Guest User
★ 13k
0
votes
1
reply
3.3k
views
maSigPro help- p. vector error
RNASeq
maSigPro
a4
RNASeq
maSigPro
a4
updated 8.5 years ago by
Mª José Nueda
▴ 90 • written 10.2 years ago by
Guest User
★ 13k
23 results • Page
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Replies
Answer: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
It doesn't seem to me that there is necessarily any problem with the analysis. You that there are "too many low-reads" but actually there …
Answer: How to make DGEList and design matrix by edgeR package
by
Gordon Smyth
50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
Answer: Finding DEGs by using edgeR
by
Gordon Smyth
50k
I am not clear what you mean that you have already normalized your data. How exactly did you normalize the data? The best way to do an edg…
Answer: Log-cpm values from limma
by
Gordon Smyth
50k
The log-cpm values from voom() are not free of batch effect. If you want batch-corrected log-cpm values, we recommend cpm() followed by rem…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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