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aastringset
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5
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20
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3.1k
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matching of AAStringSet vs. another AAStringSet
biostrings
AAStringset
7.4 years ago
tobias.kockmann
▴ 20
0
votes
1
reply
2.0k
views
Subsetting/subsequencing AAStringSet containing sequences of unequal length
biostrings
aastringset
subsetting
updated 7.0 years ago by
Hervé Pagès
16k • written 7.0 years ago by
bri.isabella
• 0
0
votes
4
replies
1.5k
views
How to get rid of the AAStrings with a stop codon
aastringset
aastring
updated 7.2 years ago by
Hervé Pagès
16k • written 7.2 years ago by
XIA.PAN
▴ 20
0
votes
1
reply
1.1k
views
Using letterFrequencyInSlidingView with an AAStringSet
biostrings
aastringset
letterFrequencyInSlidingView
xstringset
updated 6.4 years ago by
James W. MacDonald
65k • written 6.4 years ago by
joselynnw
• 0
0
votes
2
replies
827
views
how to deal with multiple barcodes/index in the analysis
dnastringset
aastringset
7.1 years ago
XIA.PAN
▴ 20
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Comment: Finding DEGs by using edgeR
by
Gordon Smyth
50k
Filtering (removing lowly expressed genes) is separate to normalization. It isn't clear why not subsetting would cause any difficulty. It …
Comment: How to make DGEList and design matrix by edgeR package
by
prity6459
• 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR
by
prity6459
• 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…
Answer: How to make DGEList and design matrix by edgeR package
by
Gordon Smyth
50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
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