Showing : acgh • reset
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plot Genome in aCGH
acgh
updated 8.0 years ago by 25k • written 8.1 years ago by • 0
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Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
10.0 years ago Dan Tenenbaum ★ 8.2k
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0
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985
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calling aberrations after segmentation with \"copynumber\" package
aCGH aCGH copynumber aCGH aCGH copynumber
10.2 years ago Guest User ★ 13k
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4.0k
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Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
10.5 years ago Dan Tenenbaum ★ 8.2k
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1
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963
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aCGH telling me to run find.hmm.states before merge hmm.states even though I have.
aCGH aCGH aCGH aCGH
updated 10.6 years ago by ▴ 210 • written 10.6 years ago by ▴ 40
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2.4k
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8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH RNASeq ChIPSeq Proteomics Annotation Normalization GO Network Cancer ChipName probe
10.6 years ago Sarah JugurnauthLittle ▴ 20
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1.2k
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CGHCall problems
aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall
10.7 years ago Guest User ★ 13k
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0
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1.2k
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readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH DNAcopy aCGH snapCGH aCGH DNAcopy aCGH snapCGH
10.8 years ago Guest User ★ 13k
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2
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3.8k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 8.8 years ago by • 0 • written 11.1 years ago by ★ 8.2k
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1
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1.3k
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Workflow for Agilent aCGH anlysis
aCGH aCGH aCGH aCGH
updated 11.4 years ago by ★ 13k • written 11.4 years ago by ▴ 10
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0
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1.2k
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Using aCGH library on Affymetrix Cytogenetics 2.7M microarray data
aCGH SNP PROcess aCGH aCGH SNP PROcess aCGH
11.4 years ago Guest User ★ 13k
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1
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1.0k
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limma - NA values after withinarray normalization
aCGH Normalization limma aCGH aCGH Normalization limma aCGH
updated 11.7 years ago by 50k • written 11.7 years ago by ▴ 10
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0
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1.3k
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agilent aCGH analysis
aCGH aCGH aCGH aCGH
11.8 years ago Guest User ★ 13k
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0
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884
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aCGH package. Plots: X axis label problems
aCGH Cancer aCGH aCGH Cancer aCGH
11.9 years ago Sarah JugurnauthLittle ▴ 20
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0
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1.1k
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aCGH segmentation with DNAcopy
aCGH probe DNAcopy aCGH aCGH probe DNAcopy aCGH
12.1 years ago Emilie Lalonde ▴ 10
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1
reply
1.1k
views
Affymetrix 250K SNP aCGH
aCGH SNP Normalization affy aCGH aCGH SNP Normalization affy aCGH
updated 13.0 years ago by ▴ 210 • written 13.0 years ago by ▴ 330
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1.1k
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analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
13.4 years ago Adeolu Adewoye ▴ 40
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1.5k
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seeking advice on analyzing CGH data
aCGH CGH aCGH aCGH CGH aCGH
13.4 years ago Paul Shannon ★ 1.1k
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1
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1.6k
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how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 13.5 years ago by 21k • written 13.5 years ago by ▴ 110
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1.4k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
13.5 years ago Martin Morgan 25k
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3
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1.5k
views
Circular binary segmentation for allele-specific CN data
aCGH aCGH aCGH aCGH
updated 13.7 years ago by ▴ 550 • written 13.7 years ago by ▴ 20
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0
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847
views
pint (& segmentation)
aCGH Preprocessing Cancer aCGH pint aCGH Preprocessing Cancer aCGH pint
14.0 years ago Leo Lahti ▴ 10
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0
replies
1.7k
views
getGEO problem
aCGH gpls aCGH GEOquery cycle aCGH gpls aCGH GEOquery cycle
14.2 years ago Sean Davis 21k
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0
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1.1k
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DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
14.2 years ago Daniel Rico ▴ 110
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0
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946
views
DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
14.2 years ago Anguraj Sadanandam ▴ 10
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2
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1.3k
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GEOmetadb query
aCGH GO aCGH GEOmetadb aCGH GO aCGH GEOmetadb
updated 14.3 years ago by ▴ 170 • written 14.3 years ago by ▴ 10
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5
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1.1k
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failure to install: aCGH depends on unavailable package
aCGH Cancer aCGH aCGH Cancer aCGH
updated 14.6 years ago by ★ 1.6k • written 14.6 years ago by ★ 1.1k
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1.0k
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general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
14.7 years ago Wolfgang RAFFELSBERGER ▴ 140
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1
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910
views
NimbleGen HG18 CGH data
aCGH CGH aCGH aCGH CGH aCGH
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 10
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4
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1.4k
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snapCGH fails in runBioHMM
aCGH Microarray TwoChannel Cancer limma aCGH snapCGH aCGH Microarray TwoChannel Cancer
updated 15.0 years ago by ▴ 160 • written 15.0 years ago by ★ 1.1k
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1.1k
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Warning in mergeLevels
aCGH Cancer aCGH aCGH Cancer aCGH
15.1 years ago Oscar Rueda ▴ 40
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4
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1.3k
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Problem in reading JPEG files for CGH arrays
aCGH Genetics aCGH GLAD aCGH Genetics aCGH GLAD
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 360
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1
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2.0k
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Entrez Gene ID to Probe Set Name
aCGH Sequencing miRNA Microarray Annotation Normalization GO Preprocessing Visualization
updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 300
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3
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
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2
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1.2k
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CGHcall error
aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall
updated 15.6 years ago by ▴ 110 • written 15.6 years ago by ▴ 40
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707
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A question about criteria for calling gain and loss in aCGH data
aCGH Cancer aCGH aCGH Cancer aCGH
15.8 years ago affy snp ▴ 640
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2
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1.2k
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CGH-like workflow for Affymetrix SNP 500k
aCGH SNP Cancer DNAcopy aCGH aCGH SNP Cancer DNAcopy aCGH
updated 15.9 years ago by ★ 2.4k • written 15.9 years ago by ★ 1.9k
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3
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1.2k
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Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
16.1 years ago pingzhao Hu ▴ 210
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1
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781
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Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 210
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1.2k
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Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
16.2 years ago Vincent J. Carey, Jr. 6.7k
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684
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aCGH package error: MAD
aCGH aCGH aCGH aCGH
16.4 years ago affy snp ▴ 640
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4
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1.4k
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running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
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2
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1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.6 years ago by ▴ 40 • written 16.6 years ago by ▴ 110
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0
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676
views
snapCGH package for expression data?
aCGH Organism aCGH snapCGH aCGH Organism aCGH snapCGH
16.6 years ago Lyudmila Mikhaylova ▴ 20
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1
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1.2k
views
Imputation problem in aCGH
aCGH Biobase multtest impute aCGH aCGH Biobase multtest impute aCGH
16.8 years ago Benjamin Otto ▴ 830
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0
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742
views
aCGH package analysis - duplicate spot averaging problem
aCGH aCGH snapCGH aCGH aCGH snapCGH
16.8 years ago Ian Roberts ▴ 70
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2
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1.0k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH convert aCGH snapCGH aCGH convert aCGH snapCGH
16.8 years ago Ian Roberts ▴ 70
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1
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1.3k
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snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
16.8 years ago Steven McKinney ▴ 310
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2
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944
views
snapCGH question
aCGH aCGH snapCGH aCGH aCGH snapCGH
updated 17.0 years ago by 21k • written 17.0 years ago by ▴ 90
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911
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aCGH: using T instead of TRUE
aCGH Cancer aCGH aCGH Cancer aCGH
17.1 years ago Ramon Diaz ★ 1.1k
50 results • Page 1 of 1
Recent ...
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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