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Answer: RNASeq Time Course Question by Michael Love 42k

> I am comparing Wildtype Day7 VS Condition Day 7, or is there a different comparison being made? yes. Remember, from the workflow, we sa…

Comment: DEseq2 time-series design by jihoon.kim.1495 • 0

Hello, The new post has been made [here][1]. Thanks! [1]: https://support.bioconductor.org/p/9160101/#9160101

Answer: Annotation for EPICv2 by James W. MacDonald 67k

The CpG you point out is in the intronic region of SHANK2, so will not be in any of the locations you have in your barplot. ![enter ima…

Comment: WGCNA by Lluís Revilla Sancho ▴ 750

This is a question of a package outside Bioconductor, it would be best to ask to the maintainer. But i think he moved to industry and the w…

Comment: dmpFinder for other objects by James W. MacDonald 67k

Yes, but you should probably use M-values instead of betas (convert using `logit2`). However, `dmpFinder` is just a way to allow people to…

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Comment: limma plotMDS - logFC inverted?

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