Recent ...
Replies
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
Michael Love
41k
Then for the remaining genes that you don't think are DE, just plot like this:
```
dds_sub <- dds[,dds$condition %in% c("x","y")]
dropleve…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
samer
•
0
yes i turned it off @mikelove
Answer: autonomics: example("read_somascan", package = "autonomics") fails, but not on B
by
Mike Smith
★
6.2k
It looks like `autonomics` uses `BiocFileCache` to create a local copy of the data and save repeat downloading. Given the (relatively) rec…
Answer: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
Michael Love
41k
I notice you are using `betaPrior=TRUE`. We have set to default and recommended `betaPrior=FALSE` for many years (since version 1.16 in 201…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
samer
•
0
Thank you for your reply, but it is always the same case. Showing a significant p-adj when there isn't a difference between the 2 condition…
Votes
Awards
• All
Popular Question to
Assa Yeroslaviz
★
1.5k
Scholar to
Gordon Smyth
49k
Popular Question to
Lluís Revilla Sancho
▴
720
Popular Question to
Frederik Ziebell
▴
20
Popular Question to
Sam
▴
10
Locations
• All
United States, just now
United States, 1 minute ago
United States, 1 minute ago
France, 4 minutes ago
United Kingdom, 12 minutes ago
United States, just now
United States, 1 minute ago
United States, 1 minute ago
France, 4 minutes ago
United Kingdom, 12 minutes ago
Traffic: 866 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6