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Showing :
affxparser
•
reset
0
votes
7
replies
1.7k
views
affxparser updateCelUnit question
Microarray
hgu133a2
affxparser
Microarray
hgu133a2
affxparser
12.8 years ago
Martha Behnke
▴ 100
0
votes
4
replies
1.2k
views
problem using affxparser on MacOSX
affxparser
affyILM
affxparser
affyILM
updated 12.4 years ago by
Noah Dowell
▴ 410 • written 12.4 years ago by
Fabrice Berger
▴ 20
1
vote
10
replies
5.0k
views
Rsubread package not available? Warning resolved
affxparser
Rsubread
BiocInstaller
affxparser
Rsubread
BiocInstaller
updated 12.4 years ago by
Wei Shi
★ 3.6k • written 12.4 years ago by
NDowell
▴ 20
1
vote
2
replies
1.4k
views
create Affymetrix .chp file for viewing in affy Integrated Genome Browser
affy
affxparser
affy
affxparser
16.0 years ago
Shi, Tao
▴ 720
0
votes
4
replies
3.9k
views
how to use R read CHP file
affy
affxparser
affy
affxparser
updated 18.4 years ago by
zhu zhidong
▴ 20 • written 18.4 years ago by
zhu zhidong
▴ 40
0
votes
3
replies
1.7k
views
readChp (affxparser) segfaults
SNP
cdf
affxparser
SNP
cdf
affxparser
updated 15.0 years ago by
Kasper Daniel Hansen
★ 6.5k • written 15.0 years ago by
Gábor Csárdi
▴ 60
0
votes
3
replies
976
views
CLF/PGF parser
Microarray
Cancer
affy
affxparser
Microarray
Cancer
affy
affxparser
updated 16.9 years ago by
James W. MacDonald
65k • written 16.9 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
2
replies
1.2k
views
makePDPackage problem? -- Affy promoter arrays
affy
affxparser
affy
affxparser
15.7 years ago
Mark Robinson
★ 1.1k
0
votes
2
replies
1.6k
views
makecdfenv package bug
cdf
affy
affxparser
oligo
cdf
affy
affxparser
oligo
updated 9.9 years ago by
Danny Arends
▴ 10 • written 9.9 years ago by
James W. MacDonald
65k
0
votes
2
replies
824
views
R Bioconductor package Affxparser keeps crashing
affxparser
r
Bioconductor
updated 22 months ago by
James W. MacDonald
65k • written 22 months ago by
Cameron
• 0
0
votes
2
replies
1.9k
views
Problem loading the "affxparser" dependency of the "oligo" package.
affxparser
oligo
affxparser
oligo
updated 11.1 years ago by
Russell Williams
▴ 20 • written 11.1 years ago by
Henrik Bengtsson
★ 2.4k
0
votes
1
reply
868
views
affxparser: bug fix in Bioc 2.0
affxparser
affxparser
16.8 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
1
reply
740
views
unclear on error in affxparser
cdf
affxparser
cdf
affxparser
updated 16.5 years ago by
Kasper Daniel Hansen
★ 6.5k • written 16.5 years ago by
Elizabeth Purdom
▴ 210
0
votes
2
replies
1.4k
views
Affxparser: how to create CEL-file from AffyBatch
cdf
affxparser
Harshlight
cdf
affxparser
Harshlight
updated 15.8 years ago by
James W. MacDonald
65k • written 15.8 years ago by
Guido Hooiveld
★ 3.9k
0
votes
1
reply
984
views
Question on Affxparser (createCel)
affxparser
affxparser
updated 15.7 years ago by
Henrik Bengtsson
★ 2.4k • written 15.7 years ago by
Guido Hooiveld
★ 3.9k
0
votes
2
replies
1.4k
views
ReadAffy crashes on mac
Preprocessing
affy
convert
affxparser
affyio
BUS
Preprocessing
affy
convert
affxparser
updated 15.7 years ago by
Ben Bolstad
★ 1.2k • written 15.7 years ago by
Nathan S. Watson-Haigh
▴ 40
0
votes
5
replies
1.4k
views
errors with attempted installation of package affxparser
GO
affxparser
GO
affxparser
updated 15.7 years ago by
Kasper Daniel Hansen
★ 6.5k • written 15.7 years ago by
Mark W Kimpel
▴ 830
0
votes
1
reply
1.0k
views
affxparser and GCC 4.3
affxparser
affxparser
updated 15.7 years ago by
Henrik Bengtsson
★ 2.4k • written 15.7 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
1
reply
1.3k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics
cdf
affy
makecdfenv
plier
affxparser
preprocessCore
Epigenetics
cdf
affy
updated 15.4 years ago by
dorothyc
▴ 140 • written 15.4 years ago by
James W. MacDonald
65k
0
votes
1
reply
1.0k
views
Reading function for Affymetrix BAR-Files
affxparser
affxparser
updated 14.8 years ago by
Sean Davis
21k • written 14.8 years ago by
Philippe Thomas
▴ 20
0
votes
4
replies
1.5k
views
scan date information
affxparser
affxparser
updated 14.6 years ago by
Saroj K Mohapatra
▴ 400 • written 14.6 years ago by
Robert Dunne
▴ 10
0
votes
2
replies
1.4k
views
Affxparser: warning creating cel file from AffyBatch
cdf
affy
affxparser
cdf
affy
affxparser
14.2 years ago
Guido Hooiveld
★ 3.9k
0
votes
7
replies
1.7k
views
Install error affxparser for R 2.15
PROcess
affxparser
BiocInstaller
PROcess
affxparser
BiocInstaller
updated 12.1 years ago by
Dan Tenenbaum
★ 8.2k • written 12.1 years ago by
David Ruau
▴ 60
3
votes
8
replies
2.3k
views
Error aroma.affymetrix [affxparser Fusion SDK exception]
affymetrix
affxparser
updated 8.4 years ago by
Henrik Bengtsson
★ 2.4k • written 8.4 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
1.5k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA
cdf
affy
makecdfenv
affxparser
miRNA
cdf
affy
makecdfenv
affxparser
10.3 years ago
James W. MacDonald
65k
0
votes
0
replies
1.1k
views
回复: Re: fRMA package
affxparser
frma
GenomicRanges
affxparser
frma
GenomicRanges
10.7 years ago
Hanyine
▴ 30
0
votes
0
replies
1.1k
views
affxparser compile error on mac
affxparser
affxparser
16.9 years ago
Mark Robinson
★ 1.1k
0
votes
0
replies
1.0k
views
Question about 'updateCel' from package 'affxparser'
cdf
PROcess
affxparser
cdf
PROcess
affxparser
12.7 years ago
Henrik Bengtsson
★ 2.4k
0
votes
0
replies
889
views
bugfix in affxparser for BioC release 1.9
cdf
affxparser
cdf
affxparser
17.5 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
0
replies
781
views
affxparser users: bug fix in BioC 1.8
affxparser
affxparser
17.9 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
0
replies
1.4k
views
FW: fRMA package
affxparser
frma
GenomicRanges
affxparser
frma
GenomicRanges
10.7 years ago
Li Liu
▴ 100
0
votes
0
replies
1.3k
views
Sc03b_MR_v04 CDF package
BiocViews
Genetics
Yeast
cdf
probe
affy
affxparser
biocViews
oligo
pdInfoBuilder
Yeast
15.6 years ago
Ludo Muller
▴ 50
0
votes
0
replies
1.1k
views
segfault when trying to convert hta20_Hs_ENSE_22.cdf to binary format
affxparser
cdf
hta2.0
6.8 years ago
relathman
▴ 20
0
votes
0
replies
902
views
readChp in affxparser
affxparser
affxparser
15.3 years ago
Henrik Bengtsson
★ 2.4k
0
votes
0
replies
1.1k
views
Creating Affymetrix CDF files
cdf
affxparser
cdf
affxparser
15.2 years ago
Henrik Bengtsson
★ 2.4k
0
votes
0
replies
770
views
affyio package usage
affxparser
affyio
affxparser
affyio
17.2 years ago
Seth Falcon
★ 7.4k
36 results • Page
1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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