Showing : affxparser • reset
0
votes
2
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826
views
R Bioconductor package Affxparser keeps crashing
affxparser r Bioconductor
updated 22 months ago by 65k • written 22 months ago by • 0
0
votes
0
replies
1.1k
views
segfault when trying to convert hta20_Hs_ENSE_22.cdf to binary format
affxparser cdf hta2.0
6.8 years ago relathman ▴ 20
3
votes
8
replies
2.3k
views
Error aroma.affymetrix [affxparser Fusion SDK exception]
affymetrix affxparser
updated 8.4 years ago by ★ 2.4k • written 8.4 years ago by ▴ 40
0
votes
2
replies
1.6k
views
makecdfenv package bug
cdf affy affxparser oligo cdf affy affxparser oligo
updated 9.9 years ago by ▴ 10 • written 9.9 years ago by 65k
0
votes
0
replies
1.5k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA cdf affy makecdfenv affxparser miRNA cdf affy makecdfenv affxparser
10.3 years ago James W. MacDonald 65k
0
votes
0
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1.1k
views
回复: Re: fRMA package
affxparser frma GenomicRanges affxparser frma GenomicRanges
10.7 years ago Hanyine ▴ 30
0
votes
0
replies
1.4k
views
FW: fRMA package
affxparser frma GenomicRanges affxparser frma GenomicRanges
10.7 years ago Li Liu ▴ 100
0
votes
2
replies
1.9k
views
Problem loading the "affxparser" dependency of the "oligo" package.
affxparser oligo affxparser oligo
updated 11.1 years ago by ▴ 20 • written 11.1 years ago by ★ 2.4k
0
votes
7
replies
1.7k
views
Install error affxparser for R 2.15
PROcess affxparser BiocInstaller PROcess affxparser BiocInstaller
updated 12.1 years ago by ★ 8.2k • written 12.1 years ago by ▴ 60
1
vote
10
replies
5.0k
views
Rsubread package not available? Warning resolved
affxparser Rsubread BiocInstaller affxparser Rsubread BiocInstaller
updated 12.4 years ago by ★ 3.6k • written 12.4 years ago by ▴ 20
0
votes
4
replies
1.2k
views
problem using affxparser on MacOSX
affxparser affyILM affxparser affyILM
updated 12.4 years ago by ▴ 410 • written 12.4 years ago by ▴ 20
0
votes
0
replies
1.0k
views
Question about 'updateCel' from package 'affxparser'
cdf PROcess affxparser cdf PROcess affxparser
12.7 years ago Henrik Bengtsson ★ 2.4k
0
votes
7
replies
1.7k
views
affxparser updateCelUnit question
Microarray hgu133a2 affxparser Microarray hgu133a2 affxparser
12.8 years ago Martha Behnke ▴ 100
0
votes
2
replies
1.4k
views
Affxparser: warning creating cel file from AffyBatch
cdf affy affxparser cdf affy affxparser
14.2 years ago Guido Hooiveld ★ 3.9k
0
votes
4
replies
1.5k
views
scan date information
affxparser affxparser
updated 14.6 years ago by ▴ 400 • written 14.6 years ago by ▴ 10
0
votes
1
reply
1.0k
views
Reading function for Affymetrix BAR-Files
affxparser affxparser
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 20
0
votes
3
replies
1.7k
views
readChp (affxparser) segfaults
SNP cdf affxparser SNP cdf affxparser
updated 15.0 years ago by ★ 6.5k • written 15.0 years ago by ▴ 60
0
votes
0
replies
1.1k
views
Creating Affymetrix CDF files
cdf affxparser cdf affxparser
15.2 years ago Henrik Bengtsson ★ 2.4k
0
votes
0
replies
903
views
readChp in affxparser
affxparser affxparser
15.3 years ago Henrik Bengtsson ★ 2.4k
0
votes
1
reply
1.3k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 15.4 years ago by ▴ 140 • written 15.4 years ago by 65k
0
votes
0
replies
1.3k
views
Sc03b_MR_v04 CDF package
BiocViews Genetics Yeast cdf probe affy affxparser biocViews oligo pdInfoBuilder Yeast
15.6 years ago Ludo Muller ▴ 50
0
votes
1
reply
1.0k
views
affxparser and GCC 4.3
affxparser affxparser
updated 15.7 years ago by ★ 2.4k • written 15.7 years ago by ★ 6.5k
0
votes
5
replies
1.4k
views
errors with attempted installation of package affxparser
GO affxparser GO affxparser
updated 15.7 years ago by ★ 6.5k • written 15.7 years ago by ▴ 830
0
votes
2
replies
1.4k
views
ReadAffy crashes on mac
Preprocessing affy convert affxparser affyio BUS Preprocessing affy convert affxparser
updated 15.7 years ago by ★ 1.2k • written 15.7 years ago by ▴ 40
0
votes
1
reply
984
views
Question on Affxparser (createCel)
affxparser affxparser
updated 15.7 years ago by ★ 2.4k • written 15.7 years ago by ★ 3.9k
0
votes
2
replies
1.2k
views
makePDPackage problem? -- Affy promoter arrays
affy affxparser affy affxparser
15.7 years ago Mark Robinson ★ 1.1k
0
votes
2
replies
1.4k
views
Affxparser: how to create CEL-file from AffyBatch
cdf affxparser Harshlight cdf affxparser Harshlight
updated 15.8 years ago by 65k • written 15.8 years ago by ★ 3.9k
1
vote
2
replies
1.4k
views
create Affymetrix .chp file for viewing in affy Integrated Genome Browser
affy affxparser affy affxparser
16.0 years ago Shi, Tao ▴ 720
0
votes
1
reply
740
views
unclear on error in affxparser
cdf affxparser cdf affxparser
updated 16.5 years ago by ★ 6.5k • written 16.5 years ago by ▴ 210
0
votes
1
reply
868
views
affxparser: bug fix in Bioc 2.0
affxparser affxparser
16.8 years ago Kasper Daniel Hansen ★ 6.5k
0
votes
3
replies
977
views
CLF/PGF parser
Microarray Cancer affy affxparser Microarray Cancer affy affxparser
updated 16.9 years ago by 65k • written 16.9 years ago by ★ 6.5k
0
votes
0
replies
1.1k
views
affxparser compile error on mac
affxparser affxparser
16.9 years ago Mark Robinson ★ 1.1k
0
votes
0
replies
771
views
affyio package usage
affxparser affyio affxparser affyio
17.2 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
889
views
bugfix in affxparser for BioC release 1.9
cdf affxparser cdf affxparser
17.5 years ago Kasper Daniel Hansen ★ 6.5k
0
votes
0
replies
782
views
affxparser users: bug fix in BioC 1.8
affxparser affxparser
17.9 years ago Kasper Daniel Hansen ★ 6.5k
0
votes
4
replies
3.9k
views
how to use R read CHP file
affy affxparser affy affxparser
updated 18.4 years ago by ▴ 20 • written 18.4 years ago by ▴ 40
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…
Answer: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
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biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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