Showing : affy • reset
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rownames in topTable and posterior probability
affy limma affy limma
updated 20.7 years ago by 53k • written 20.7 years ago by ★ 1.8k
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4
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views
Anyone have a GO slim list for Affy HG-U133A or HG-U133Av2?
Annotation GO annotate affy PROcess Category cycle Annotation GO annotate affy PROcess
updated 20.7 years ago by ▴ 310 • written 20.7 years ago by ▴ 250
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882
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Anyone have a GO slim list for Affy HG-U133A or HG-U133Av2?
Annotation GO annotate affy Annotation GO annotate affy
updated 20.7 years ago by 21k • written 20.7 years ago by ▴ 250
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sanity check: p-value from RMA expression estimates
Normalization probe affy affyPLM Normalization probe affy affyPLM
20.7 years ago Reiner Schulz ▴ 20
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2
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1.4k
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limma and paired data
affy limma affy limma
20.7 years ago SKALKO@clinic.ub.es ▴ 40
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0
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906
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affy to normalize others single chanels...
affy limma affy limma
20.7 years ago Marcelo Luiz de Laia ▴ 770
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0
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990
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
20.7 years ago Harry Hurd ▴ 60
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2
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1.1k
views
error in installing Bioconductor development packages
Biobase annotate genefilter reposTools affy Biobase annotate genefilter reposTools affy
updated 20.7 years ago by ★ 7.4k • written 20.7 years ago by ▴ 10
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0
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1.1k
views
sanity check: recipe for p-value from RMA expression estimates
Normalization probe affy affyPLM Normalization probe affy affyPLM
20.7 years ago Reiner Schulz ▴ 20
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1.0k
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limma paired samples using block
affy affy
20.8 years ago Dick Beyer ★ 1.4k
0
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7
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2.0k
views
questions on results from mt.maxT (multtest)
multtest affy multtest affy
updated 20.8 years ago by ▴ 130 • written 20.8 years ago by ▴ 300
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0
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1.1k
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exprSet object help
Biobase affy Biobase affy
20.8 years ago Marcelo Luiz de Laia ▴ 770
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0
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880
views
Microarray data analysis for experiments using amplifiedRNA
Microarray Cancer affy Microarray Cancer affy
20.8 years ago Claire Wilson ▴ 280
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1
reply
779
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Microarray data analysis for experiments using amplified RNA
affy affy
updated 20.8 years ago by ★ 5.5k • written 20.8 years ago by ▴ 10
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2
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1.0k
views
factorial analysis of affy arrays
affy affy
updated 20.8 years ago by ▴ 210 • written 20.8 years ago by ▴ 40
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0
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2.1k
views
RMA normalization,which samples should be normalized together
Normalization probe affy limma gcrma DOSE Normalization probe affy limma gcrma DOSE
20.8 years ago Dipl.-Ing. Johannes Rainer ▴ 430
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3
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1.3k
views
Questions for Affy package on hist() and boxplot()
affy graph affy graph
20.8 years ago Luo, Wen ▴ 50
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mas5call select genes
affy gcrma simpleaffy affy gcrma simpleaffy
20.8 years ago Naomi Altman ★ 6.0k
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773
views
NCBI LocusLink -> Entrez Gene transition
affy affy
20.8 years ago Bubba Gump ▴ 10
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628
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Affy Normalization--stable probeset option
Genetics Normalization affy Genetics Normalization affy
20.8 years ago alexpearlman@pearlquant.com ▴ 10
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2
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888
views
Could anyone tell me how to check the code for image() function in Affy package?
affy affy
updated 20.8 years ago by 68k • written 20.8 years ago by ▴ 140
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7
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1.7k
views
Affy 1.5.8 functions not working on Mac OS X 10.3
affy limma affy limma
updated 20.8 years ago by ★ 5.5k • written 20.8 years ago by ▴ 30
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5
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1.7k
views
affy Yeast 2.0 annotation
Annotation Yeast affy limma AnnBuilder Annotation Yeast affy limma AnnBuilder
updated 20.8 years ago by 6.7k • written 20.8 years ago by ▴ 320
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4
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1.1k
views
(no subject)
affy affy
updated 20.8 years ago by ▴ 10 • written 20.8 years ago by ▴ 100
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5
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1.9k
views
mas5call select genes
affy affy
updated 20.8 years ago by ★ 1.0k • written 20.8 years ago by ▴ 130
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2
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1.4k
views
affymetrix chip type
Pharmacogenomics affy Pharmacogenomics affy
updated 20.8 years ago by 68k • written 20.8 years ago by ▴ 130
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3
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1.4k
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limma design matrix
affy BRAIN affy BRAIN
updated 20.8 years ago by ▴ 720 • written 20.8 years ago by ▴ 250
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0
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711
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How can I extract Raw Intensities with Probe IDs on Affy Chips
affy affy
20.8 years ago SAURIN ★ 1.1k
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2
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2.3k
views
F-tests for factorial effects - limma
Microarray affy limma Microarray affy limma
updated 20.9 years ago by 53k • written 20.9 years ago by ★ 6.0k
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0
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968
views
TAG3 script
Yeast cdf probe affy Yeast cdf probe affy
20.9 years ago Joshi, Nina NIH/NCI ▴ 40
0
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1
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1.2k
views
Re: F-tests for factorial effects - limma
Microarray Cancer affy limma Microarray Cancer affy limma
updated 20.9 years ago by ★ 6.0k • written 20.9 years ago by ★ 1.1k
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3
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985
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affy to normalize others single chanels...
affy affy
updated 20.9 years ago by ★ 2.3k • written 20.9 years ago by ▴ 770
0
votes
1
reply
634
views
doing some math on an array of PM probes
probe affy probe affy
updated 20.9 years ago by 68k • written 20.9 years ago by ▴ 10
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1
reply
766
views
Import of high resolution .CEL files
Microarray Cancer affy Microarray Cancer affy
updated 20.9 years ago by ▴ 420 • written 20.9 years ago by 68k
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0
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564
views
Soybean cdfenv
cdf affy convert cdf affy convert
20.9 years ago Ithal, Nagabhushana ▴ 20
0
votes
1
reply
635
views
Soybean CDFNV
cdf affy convert cdf affy convert
updated 20.9 years ago by 68k • written 20.9 years ago by ▴ 20
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1
reply
1.7k
views
Error setting boxplot title in Affy
affy affy
updated 20.9 years ago by 68k • written 20.9 years ago by ▴ 340
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1
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1.4k
views
problems with affy & widgets
Pharmacogenomics tkWidgets affy Pharmacogenomics tkWidgets affy
20.9 years ago Edoardo Saccenti ▴ 130
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2
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1.4k
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cDNA raw data
Cancer Prostate affy Cancer Prostate affy
updated 20.9 years ago by 21k • written 20.9 years ago by ▴ 600
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1
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1.0k
views
F-tests for factorial effects - limma
affy limma affy limma
updated 20.9 years ago by 53k • written 20.9 years ago by ★ 6.0k
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0
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766
views
cdf environment for Yeast 2.0 array
Yeast cdf affy Yeast cdf affy
20.9 years ago Jakub Orzechowski Westholm ▴ 40
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0
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965
views
LGPL C++ source code available from Affy for reading their file f ormats
cdf affy cdf affy
20.9 years ago Wittner, Ben ▴ 290
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2
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1.3k
views
gene classification problem
GO affy ASSIGN GO affy ASSIGN
updated 20.9 years ago by ▴ 290 • written 20.9 years ago by ▴ 890
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0
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1.0k
views
alt cdf env probe index config problem
GO cdf probe affy GO cdf probe affy
20.9 years ago Rhonda DeCook ▴ 90
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1
reply
991
views
RE: correcting for 3' bias in highly amplified RNA samples
probe affy probe affy
updated 21.0 years ago by ▴ 290 • written 21.0 years ago by ▴ 70
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0
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947
views
justRMA segmentation fault when calculating expr.
cdf affy cdf affy
21.0 years ago ulas karaoz ▴ 80
0
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0
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1.1k
views
limma single channel analysis
affy convert affy convert
21.0 years ago Ren Na ▴ 250
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votes
0
replies
855
views
correcting for 3' bias in highly amplified RNA samples and Affyme trix chips
affy affy
21.0 years ago Wittner, Ben ▴ 290
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votes
0
replies
557
views
Fwd: Affy library and accessing probe data
probe affy probe affy
21.0 years ago hrishikesh deshmukh ▴ 420
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2
replies
1.1k
views
M vs. A plot
affy affy
21.0 years ago kvyas ▴ 50
1,805 results • Page 26 of 37
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
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Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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