Showing : affyPLM • reset
0
votes
12
replies
1.4k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 16.3 years ago by ★ 5.5k • written 16.3 years ago by ▴ 460
0
votes
11
replies
2.1k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 16.3 years ago by ▴ 10 • written 16.3 years ago by ★ 2.2k
0
votes
10
replies
1.2k
views
exonmap RMA function
Microarray Cancer affyPLM exonmap Microarray Cancer affyPLM exonmap
updated 15.2 years ago by ▴ 250 • written 15.2 years ago by 25k
0
votes
9
replies
1.3k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 15.9 years ago by ★ 7.4k • written 15.9 years ago by ★ 2.2k
0
votes
8
replies
1.4k
views
Biological replication (was RNA degradation problem)
Normalization probe affy affyPLM Normalization probe affy affyPLM
17.2 years ago Naomi Altman ★ 6.0k
0
votes
6
replies
752
views
What wrong with my data using LIMMA
Microarray affy limma affyPLM Microarray affy limma affyPLM
updated 17.6 years ago by ★ 1.8k • written 17.6 years ago by 47k
0
votes
5
replies
2.0k
views
error in ls() unused arguments
mouse4302 affyPLM mouse4302 affyPLM
updated 14.1 years ago by ★ 2.3k • written 14.1 years ago by ▴ 40
0
votes
5
replies
1.5k
views
affyPLM - cant plot chip pseudo image
cdf genefilter affy affydata affyPLM simpleaffy affyio cdf genefilter affy affydata
updated 15.7 years ago by 62k • written 15.7 years ago by ▴ 50
0
votes
5
replies
749
views
how to rank affy probesets by their probe-effect magnitude
probe affy affyPLM probe affy affyPLM
updated 11.1 years ago by 62k • written 11.1 years ago by ★ 3.0k
0
votes
4
replies
1.1k
views
affyPLM crashing R
affyPLM Harshlight affyPLM Harshlight
updated 9.3 years ago by 13k • written 9.3 years ago by ★ 12k
0
votes
4
replies
920
views
MA plots for large number of arrays
affy affyPLM beadarray lumi affy affyPLM beadarray lumi
updated 11.4 years ago by ▴ 720 • written 11.4 years ago by ▴ 360
0
votes
4
replies
1.3k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 15.9 years ago by ★ 1.2k • written 15.9 years ago by ▴ 30
0
votes
4
replies
1.4k
views
arrayQualityMetrics package - bugs and errors
limma affyPLM arrayQualityMetrics limma affyPLM arrayQualityMetrics
updated 11.1 years ago by 13k • written 11.1 years ago by ▴ 90
0
votes
4
replies
1.2k
views
Mouse Gene ST v1 CDF Issues (MoGene10stv1): Failure of affyPLM and pdfInfoBuilder
Annotation cdf probe affy affyPLM Annotation cdf probe affy affyPLM
updated 14.3 years ago by 62k • written 14.3 years ago by ▴ 130
0
votes
4
replies
1.1k
views
Problems with the size of the plots obtained with AffyPLM
cdf affy gcrma affyPLM affyio cdf affy gcrma affyPLM affyio
updated 16.2 years ago by ▴ 550 • written 16.2 years ago by ▴ 350
0
votes
3
replies
872
views
Install of 1.5 Packages fails
GO edd genefilter annaffy affyPLM marray GO edd genefilter annaffy affyPLM marray
updated 18.4 years ago by ★ 5.5k • written 18.4 years ago by ★ 1.7k
0
votes
3
replies
937
views
LIMMA No residual using rmaPLM
Preprocessing affyPLM Preprocessing affyPLM
updated 17.6 years ago by 47k • written 17.6 years ago by ▴ 270
0
votes
3
replies
1.2k
views
identical output plots for NUSE AND RLE
GO Cancer affyPLM GO Cancer affyPLM
updated 12.8 years ago by ▴ 320 • written 12.8 years ago by ★ 2.0k
0
votes
3
replies
797
views
Images from exon arrays
affy affyPLM affy affyPLM
12.5 years ago Popovic, Jelena ▴ 20
0
votes
3
replies
764
views
AffyPLM
affyPLM affyPLM
17.7 years ago lucia ¿? ▴ 50
0
votes
3
replies
1.8k
views
arrayQualityMetrics error on windows
affyPLM affyPLM
10.6 years ago Marcus Davy ▴ 390
0
votes
3
replies
1.1k
views
Is a subset of my arrays from degraded RNA?
Microarray GO Clustering affy affyPLM simpleaffy Microarray GO Clustering affy affyPLM
8.7 years ago Peter Davidsen ▴ 210
0
votes
3
replies
1.3k
views
ExpressionSet, fitPLM confusion
cdf probe gcrma matchprobes affyPLM affyio cdf probe gcrma matchprobes affyPLM affyio
updated 16.3 years ago by 13k • written 16.3 years ago by ▴ 510
0
votes
3
replies
654
views
Error messages in affylmGUI on PC with respect to plotting
limma affyPLM affylmGUI limma affyPLM affylmGUI
17.7 years ago Seth Falcon ★ 7.4k
0
votes
2
replies
681
views
normalize.quantiles.robust: how to implement weights for different arrays?
cdf gcrma matchprobes affyPLM affyio cdf gcrma matchprobes affyPLM affyio
updated 16.5 years ago by 6.5k • written 16.5 years ago by ▴ 420
0
votes
2
replies
749
views
AffyPLM
affyPLM affyPLM
updated 19.1 years ago by ▴ 940 • written 19.1 years ago by ▴ 50
0
votes
2
replies
876
views
median of the NUSE value
cdf affy gcrma affyPLM affyio cdf affy gcrma affyPLM affyio
updated 16.8 years ago by ★ 1.2k • written 16.8 years ago by ▴ 270
0
votes
2
replies
1.2k
views
SCAN.UPC vs NUSE
affy affyPLM SCAN.UPC affy affyPLM SCAN.UPC
updated 9.5 years ago by ▴ 590 • written 9.5 years ago by ▴ 10
0
votes
2
replies
753
views
Saving all AffyPLM residual plots to disk
affyPLM affyPLM
updated 9.5 years ago by 62k • written 9.5 years ago by ▴ 90
0
votes
2
replies
649
views
loading affyPLM with R 2.4.
affyPLM affyPLM
updated 16.6 years ago by ★ 1.2k • written 16.6 years ago by ▴ 20
0
votes
2
replies
1.2k
views
objects masked from packages
affyPLM affyPLM
updated 13.1 years ago by 62k • written 13.1 years ago by ★ 1.5k
0
votes
2
replies
1.0k
views
RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
Microarray Annotation Normalization Preprocessing cdf probe affy affyPLM oligo Microarray
updated 13.1 years ago by ★ 1.2k • written 13.1 years ago by ★ 4.3k
0
votes
2
replies
937
views
ArrayQualityMetrics: Problem with labels in plots. A bug??
affyPLM arrayQualityMetrics affyPLM arrayQualityMetrics
updated 13.4 years ago by ▴ 280 • written 13.4 years ago by ▴ 40
0
votes
2
replies
865
views
Re: how to evaluate the arrays quality?
GO affy affyPLM GO affy affyPLM
updated 17.8 years ago by ▴ 110 • written 17.8 years ago by ▴ 350
0
votes
2
replies
1.0k
views
Failure to install specific packages from Bioconductor on a Linux machine running R 2.3.1
affy gcrma matchprobes affyPLM affyio affy gcrma matchprobes affyPLM affyio
updated 16.8 years ago by ▴ 50 • written 16.8 years ago by ▴ 20
0
votes
2
replies
1.0k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 130
0
votes
2
replies
1.3k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 16.0 years ago by 47k • written 16.0 years ago by ▴ 680
0
votes
2
replies
2.5k
views
Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 16.4 years ago by ★ 7.4k • written 16.4 years ago by ▴ 360
0
votes
2
replies
851
views
"normalize.quantiles.robust" produces the SAME intensities from different weights?!
Normalization affydata gcrma matchprobes affyPLM affyio Normalization affydata gcrma
updated 16.5 years ago by ★ 1.2k • written 16.5 years ago by ▴ 420
1
vote
1
reply
1.9k
views
Computing NUSE and RLE scores
affyPLM RLE NUSE
updated 8.1 years ago by 21k • written 8.1 years ago by ▴ 10
0
votes
1
reply
915
views
Problems with packages: annaffy, GO, KEGG, golubEsets
GO edd annaffy affyPLM GO edd annaffy affyPLM
updated 18.3 years ago by ★ 5.5k • written 18.3 years ago by ▴ 10
0
votes
1
reply
824
views
RNA degradation problem
Normalization affy limma affyPLM PROcess Normalization affy limma affyPLM PROcess
updated 17.2 years ago by ▴ 810 • written 17.2 years ago by ▴ 940
0
votes
1
reply
877
views
affy package in MacOSX
affy affydata matchprobes affyPLM affy affydata matchprobes affyPLM
updated 18.7 years ago by ▴ 1000 • written 18.7 years ago by ▴ 60
0
votes
1
reply
1.1k
views
Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 18.9 years ago by 13k • written 18.9 years ago by ▴ 810
0
votes
1
reply
978
views
NUSE lmFit fitPLM
Microarray limma affyPLM
updated 7.2 years ago by 47k • written 11.0 years ago by ▴ 10
0
votes
1
reply
1.0k
views
package \"affyPLM\" install errors on linux
affyPLM affyPLM
updated 9.7 years ago by 6.6k • written 9.7 years ago by ★ 12k
0
votes
1
reply
760
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 15.5 years ago by ★ 1.2k • written 15.5 years ago by ★ 2.4k
0
votes
1
reply
712
views
Quality control on Human Affymetrix Exon microarrays
affyPLM xps affyPLM xps
updated 12.6 years ago by ★ 3.9k • written 12.6 years ago by ▴ 120
1
vote
1
reply
709
views
affyPLM boxplots for subset of samples
affyPLM
updated 6.7 years ago by 62k • written 6.7 years ago by ▴ 360
0
votes
1
reply
1.0k
views
[R] problem loading affycoretools - solved!
Biobase Ruuid genefilter multtest graph limma gcrma matchprobes affyPLM RBGL simpleaffy
updated 16.6 years ago by ★ 7.4k • written 16.6 years ago by ★ 2.2k
50 results • Page 1 of 1
Recent ...
Replies
Comment: How to getting synonymous SNPs from BiomaRt before timing out? by Damien • 0
Thank you for your response. How can I request for biomaRt to retrieve only synonymous variants? It does not appear to be an option for fi…
Comment: Pick some clusters to run trajectory and pseudotime analysis on Monocle3 by mzh • 0
@martacrespi7 might be a little late but I also ran into that problem and found a solution. Apparently, in that case "root_cells = colname…
Comment: ggplot and geom_lines for clustering by ATpoint ★ 2.4k
This is not related to Bioconductor. Please ask at biostars.org or StackExchange.
Comment: how can I do gene differential analysis on data after vst by ATpoint ★ 2.4k
This is getting out of hand. You have been advised how your analysis can basically be done, the user guide covers it. It is not feasible to…
Comment: how can I do gene differential analysis on data after vst by linouhao ▴ 20
This is whole code, because there are four groups in the geo set. I want the first 3 vs 3, and the 1:3 is the control, 4:6 is the treat gr…
Votes
Case-control study using WGCNA
Case-control study using WGCNA
Comment: How to combine two DESeq2 objects (dds) for analysis
Comment: How to combine two DESeq2 objects (dds) for analysis
How many parameters should be included in the model design for deseq2?
Awards • All
Popular Question to Seymoo • 0
Prophet to linouhao ▴ 20
Popular Question to dr ▴ 10
Commentator to James W. MacDonald 62k
Popular Question to Sam ▴ 10
Locations • All
France, just now
Switzerland, 1 minute ago
WEHI, Melbourne, Australia, 2 minutes ago
India, 3 minutes ago
United States, 7 minutes ago
Traffic: 459 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6