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Answer: How does DESeq2 calculate FPKM values when gene lengths are not supplied?
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Comment: filtering out lowly expressed genes by groups
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James W. MacDonald
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You might want to filter first though.
```
fun <- function(deseqobj, contvec, cutoff) {
lildds <- dds[rowMeans(assays(deseqobj…
Answer: filtering out lowly expressed genes by groups
by
James W. MacDonald
63k
Something like
```
results(dds, c("condition","T0_unstim_CRWnP","T0_unstim_HC"))[rowMeans(assays(dds, "counts")[,colData(dds)$condition…
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