Showing : affyio • reset
1
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se.exprs extractor question
probe affy affyio probe affy affyio
updated 16.8 years ago by ▴ 390 • written 16.8 years ago by ▴ 120
0
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1
reply
706
views
C entry point "ReadHeader" not in DLL for package "affy"
Biobase affy affyio Biobase affy affyio
updated 18.1 years ago by ★ 1.2k • written 18.1 years ago by ▴ 890
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3
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1.5k
views
ExpressionSet, fitPLM confusion
cdf probe gcrma matchprobes affyPLM affyio cdf probe gcrma matchprobes affyPLM affyio
updated 17.4 years ago by ★ 13k • written 17.4 years ago by ▴ 510
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votes
2
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913
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problem with CoCiteStats in bioC 1.8
cdf reposTools affy CoCiteStats affyio cdf reposTools affy CoCiteStats affyio
updated 18.0 years ago by ★ 7.4k • written 18.0 years ago by ▴ 890
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4
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1.9k
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Failure to load Biobase
Biobase affy limma gcrma matchprobes affyio Biobase affy limma gcrma matchprobes affyio
updated 17.9 years ago by 25k • written 17.9 years ago by ★ 2.2k
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Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
17.9 years ago Jenny Drnevich ★ 2.2k
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3
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summarizing probe intensites before or after normalization- 1. how to do with RMA 2. Opinions?
Normalization probe affy affyio Normalization probe affy affyio
updated 17.6 years ago by ★ 1.2k • written 17.6 years ago by ▴ 420
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blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
17.9 years ago Pedro López Romero ▴ 360
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2
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1.3k
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Failure to install specific packages from Bioconductor on a Linux machine running R 2.3.1
affy gcrma matchprobes affyPLM affyio affy gcrma matchprobes affyPLM affyio
updated 17.9 years ago by ▴ 50 • written 17.9 years ago by ▴ 20
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2
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1.1k
views
median of the NUSE value
cdf affy gcrma affyPLM affyio cdf affy gcrma affyPLM affyio
updated 17.9 years ago by ★ 1.2k • written 17.9 years ago by ▴ 270
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1
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1.1k
views
qc function missing in Linux version of simpleaffy
cdf genefilter affy affydata simpleaffy affyQCReport affyio cdf genefilter affy affydata
updated 17.8 years ago by 65k • written 17.8 years ago by ▴ 160
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5
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1.8k
views
RMA and justRMA error
Cancer cdf Biobase affy gcrma affyio Cancer cdf Biobase affy gcrma affyio
17.7 years ago Aedin Culhane ▴ 510
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1
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874
views
qc
Survival Biobase genefilter affy affydata affyPLM simpleaffy affyio Survival Biobase
updated 17.7 years ago by 65k • written 17.7 years ago by ▴ 10
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2
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1.3k
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Changing the value of sampleNames for exprSet
affy affyio affy affyio
updated 17.7 years ago by 25k • written 17.7 years ago by ▴ 110
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2
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1.3k
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problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
17.9 years ago Kimpel, Mark W ▴ 890
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0
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925
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4 replicates, of 3 tissues- one good hyb (2xreps), one bad hyb (2xreps). Best way forward?
qPCR affy affydata vsn limma gcrma matchprobes affyPLM affyio BRAIN qPCR affy affydata
17.6 years ago k. brand ▴ 420
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0
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953
views
method for removing consistent technical bias?
affy affydata vsn limma gcrma matchprobes affyPLM affyio affy affydata vsn limma gcrma
17.6 years ago k. brand ▴ 420
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2
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946
views
normalize.quantiles.robust: how to implement weights for different arrays?
cdf gcrma matchprobes affyPLM affyio cdf gcrma matchprobes affyPLM affyio
updated 17.6 years ago by ★ 6.5k • written 17.6 years ago by ▴ 420
0
votes
2
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1.1k
views
"normalize.quantiles.robust" produces the SAME intensities from different weights?!
Normalization affydata gcrma matchprobes affyPLM affyio Normalization affydata gcrma
updated 17.6 years ago by ★ 1.2k • written 17.6 years ago by ▴ 420
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2
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1.4k
views
problem updating packages OCPlus and RSNper
affy limma affyio OCplus affy limma affyio OCplus
updated 17.5 years ago by 16k • written 17.5 years ago by ▴ 890
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votes
1
reply
869
views
makePlatformDesign error
affyio oligo makePlatformDesign affyio oligo makePlatformDesign
updated 17.5 years ago by 65k • written 17.5 years ago by ▴ 20
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2
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1.0k
views
beadarray example data problem
Biobase affy affyio beadarray Biobase affy affyio beadarray
17.5 years ago Keith Satterley ▴ 450
0
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0
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956
views
problems reading Illumina files using BeadExplorer
affy widgetTools limma marray convert affyio BeadExplorer affy widgetTools limma marray
17.5 years ago Vitalina Komashko ▴ 10
0
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3
replies
990
views
beadarray example data problem 2
Biobase affy affyio beadarray Biobase affy affyio beadarray
17.5 years ago Martin Morgan 25k
0
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0
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1.0k
views
simpleaffy gives error: unable to find an inherited method for function "pData"
affy simpleaffy affyio affy simpleaffy affyio
17.5 years ago Dick Beyer ★ 1.4k
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0
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782
views
Bioconductor Digest, Vol 45, Issue 9
affy simpleaffy affyio affy simpleaffy affyio
17.5 years ago Dick Beyer ★ 1.4k
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2
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1.5k
views
results of justPlier vs. RMA
Clustering affy plier affyio Clustering affy plier affyio
updated 17.4 years ago by ▴ 120 • written 17.5 years ago by ▴ 360
0
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2
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2.9k
views
Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 360
0
votes
1
reply
2.8k
views
ReadAffy can not find function read.AnnotatedDataFrame
Biobase genefilter affydata limma simpleaffy hopach affyio Biobase genefilter affydata
updated 17.4 years ago by 65k • written 17.4 years ago by ▴ 510
0
votes
1
reply
1.7k
views
gcrma background correction-saving output
cdf affy gcrma matchprobes affyio cdf affy gcrma matchprobes affyio
updated 5.3 years ago by 0 • written 17.4 years ago by ★ 2.2k
0
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1
reply
1.3k
views
R installation error----please help
affyio affyio
updated 18.0 years ago by 16k • written 18.0 years ago by ▴ 60
0
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2
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1.6k
views
problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 890
0
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0
replies
590
views
beadarray: problem with reading in Bead Summary Data
Biobase affy affyio beadarray Biobase affy affyio beadarray
17.3 years ago Perry Moerland ▴ 120
0
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1
reply
1.5k
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 8.9 years ago by • 0 • written 17.3 years ago by ▴ 170
0
votes
2
replies
990
views
"oligo" crashes in windows XP
SNP GO affyio oligo crlmm SNP GO affyio oligo crlmm
updated 17.3 years ago by ★ 4.3k • written 17.3 years ago by ▴ 190
0
votes
4
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1.4k
views
Problems with the size of the plots obtained with AffyPLM
cdf affy gcrma affyPLM affyio cdf affy gcrma affyPLM affyio
updated 17.3 years ago by ▴ 550 • written 17.3 years ago by ▴ 350
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1
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1.8k
views
using simpleaffy incorrectly, or is there a problem with the read.affy function?
Microarray Survival Cancer genefilter affy simpleaffy affyio Microarray Survival Cancer
17.3 years ago k. brand ▴ 420
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1
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1.5k
views
beadarray and BeadStudio v.2.3.41
Biobase affy affyio beadarray Biobase affy affyio beadarray
updated 17.2 years ago by ▴ 320 • written 17.2 years ago by ▴ 70
0
votes
0
replies
765
views
affyio package usage
affxparser affyio affxparser affyio
17.2 years ago Seth Falcon ★ 7.4k
0
votes
8
replies
1.6k
views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 17.2 years ago by ★ 7.4k • written 17.2 years ago by ★ 2.2k
0
votes
2
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1.6k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
17.2 years ago Mark W Kimpel ▴ 830
0
votes
1
reply
956
views
Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ★ 1.3k
0
votes
2
replies
941
views
steps to manually build AffyBatch object
GO affy affyio GO affy affyio
updated 17.0 years ago by 21k • written 17.0 years ago by ★ 1.2k
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1
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1.1k
views
paired design, LIMMA
cdf tkWidgets affy widgetTools limma affyio cdf tkWidgets affy widgetTools limma affyio
updated 17.0 years ago by ▴ 470 • written 17.0 years ago by 50k
0
votes
0
replies
569
views
Suggestions for upgrading BioC (was: ReadAffy problem)
Cancer affyio Cancer affyio
17.0 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
648
views
(no subject)
hgu95av2 cdf affy affyio hgu95av2 cdf affy affyio
16.9 years ago David Ruau ▴ 190
0
votes
6
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1.4k
views
mas5 update.default problem
hgu95av2 cdf affy affyio hgu95av2 cdf affy affyio
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 190
0
votes
9
replies
1.8k
views
problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 80
0
votes
0
replies
996
views
Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
16.9 years ago Seth Falcon ★ 7.4k
0
votes
6
replies
1.9k
views
ReadAffy Error: new versions causing problems?
genefilter gcrma matchprobes simpleaffy affyio genefilter gcrma matchprobes simpleaffy
updated 16.9 years ago by ▴ 20 • written 16.9 years ago by ▴ 200
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
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Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
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