Showing : affylmgui • reset
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tkrplot in R2.0 on Mac OS X
affylmGUI affylmGUI
updated 19.4 years ago by ▴ 1000 • written 19.4 years ago by ▴ 100
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6
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2.2k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 15.7 years ago by ▴ 10 • written 15.7 years ago by ▴ 50
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4
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1.2k
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Exon Array analysis
cdf affylmGUI cdf affylmGUI
updated 15.0 years ago by ▴ 500 • written 15.0 years ago by ▴ 10
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5
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1.5k
views
Problem with Installing affylmGUI on MAC OS X
Cancer affylmGUI Cancer affylmGUI
18.8 years ago Richard Friedman ★ 2.0k
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4
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1.4k
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Regarding CDF file
cdf affylmGUI cdf affylmGUI
updated 10.9 years ago by 65k • written 10.9 years ago by ▴ 170
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8
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1.7k
views
affylmGUI/biocReposList() Problem
affylmGUI affylmGUI
updated 11.8 years ago by 65k • written 11.8 years ago by ▴ 30
0
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2
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896
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affylmGUI error when normalizing
Microarray Normalization affylmGUI Microarray Normalization affylmGUI
updated 19.2 years ago by ▴ 1000 • written 19.2 years ago by ▴ 30
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8
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1.8k
views
oneChannelGUI
Rgraphviz affylmGUI oneChannelGUI Rgraphviz affylmGUI oneChannelGUI
updated 13.4 years ago by ▴ 500 • written 13.4 years ago by ▴ 200
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2
replies
871
views
affylmGUI
drosgenome1 affylmGUI drosgenome1 affylmGUI
updated 20.0 years ago by ▴ 1000 • written 20.0 years ago by ▴ 180
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3
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1.3k
views
limma gene symbol not avialable problem
cdf affy affydata limma affylmGUI affyio cdf affy affydata limma affylmGUI affyio
updated 16.9 years ago by 65k • written 16.9 years ago by ▴ 450
0
votes
3
replies
899
views
Error messages in affylmGUI on PC with respect to plotting
limma affyPLM affylmGUI limma affyPLM affylmGUI
18.8 years ago Seth Falcon ★ 7.4k
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2
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1.1k
views
affylmGUI annotations
Annotation annotate affylmGUI Annotation annotate affylmGUI
updated 12.7 years ago by ★ 2.0k • written 12.7 years ago by ▴ 30
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2
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1.8k
views
Tktable 2.9 makefile problem
GO affylmGUI GO affylmGUI
updated 12.1 years ago by 25k • written 12.1 years ago by ▴ 10
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votes
3
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1.0k
views
Using CDF file on affylmGUI
Proteomics GO affylmGUI Proteomics GO affylmGUI
updated 17.4 years ago by ▴ 450 • written 17.4 years ago by ▴ 70
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votes
3
replies
1.1k
views
R crashes after image array plots hgu133plus2 in R2.6.0
GUI hgu133plus2 affy limma affylmGUI GUI hgu133plus2 affy limma affylmGUI
updated 16.5 years ago by 25k • written 16.5 years ago by ★ 2.0k
0
votes
2
replies
1.4k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 15.7 years ago by ▴ 90 • written 15.7 years ago by ▴ 140
0
votes
7
replies
1.7k
views
Missing GeneSymbol and Name information in TopTable
Annotation hgu133plus2 annaffy affylmGUI Annotation hgu133plus2 annaffy affylmGUI
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 40
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votes
1
reply
860
views
Unique CDF File
cdf affylmGUI cdf affylmGUI
updated 14.0 years ago by ★ 6.5k • written 14.0 years ago by ▴ 10
0
votes
1
reply
991
views
Difficulty installing oneChannelGUI in Vista
Cancer affylmGUI oneChannelGUI Cancer affylmGUI oneChannelGUI
updated 13.9 years ago by 65k • written 13.9 years ago by ★ 2.0k
0
votes
1
reply
629
views
Please help: AffylmGUI errors
Microarray affylmGUI ASSIGN Microarray affylmGUI ASSIGN
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 30
0
votes
3
replies
1.2k
views
Error in parse() loading affylmGUI
affylmGUI affylmGUI
updated 19.8 years ago by ▴ 1000 • written 19.8 years ago by ▴ 340
0
votes
4
replies
2.4k
views
tcltk package for R 2.14.1
affylmGUI BiocInstaller affylmGUI BiocInstaller
updated 12.2 years ago by ★ 8.2k • written 12.2 years ago by ▴ 70
0
votes
1
reply
1.2k
views
(microarray) - affylmGUI error when reading Affymetrix U133A and U133B .CEL file
Microarray PROcess affylmGUI Microarray PROcess affylmGUI
updated 11.6 years ago by 65k • written 11.6 years ago by ▴ 30
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votes
1
reply
1.2k
views
Regarding CDF & annotation package
Microarray Annotation affylmGUI Microarray Annotation affylmGUI
updated 11.5 years ago by ★ 3.9k • written 11.5 years ago by ▴ 10
0
votes
1
reply
966
views
AffylmGUI freezes with recent updates of Windows 7 Enterprise Service Pack 1
Cancer affylmGUI Cancer affylmGUI
updated 11.3 years ago by ▴ 450 • written 11.3 years ago by ★ 2.0k
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3
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1.4k
views
affylmGUI affy affymetrix
affylmgui
updated 8.4 years ago by 50k • written 8.4 years ago by • 0
0
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2
replies
2.1k
views
How to convert probe sets to Gene symbols ?
affylmgui affymetrix microarrays hgu133plus2
updated 8.4 years ago by ▴ 360 • written 8.4 years ago by • 0
1
vote
6
replies
1.2k
views
Error while running affylmGUI
microarray limma affy affylmGUI
updated 5.1 years ago by 50k • written 5.1 years ago by • 0
0
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5
replies
1.2k
views
CDF/Probe/Annotation for GNF1m custom chip
cdf probe affylmGUI cdf probe affylmGUI
updated 17.0 years ago by ★ 6.5k • written 17.0 years ago by ▴ 830
0
votes
1
reply
1.0k
views
loading CEL files in affylmGUI
Annotation affylmGUI Annotation affylmGUI
updated 19.8 years ago by ▴ 1000 • written 19.8 years ago by ▴ 60
0
votes
1
reply
1.1k
views
An error of affylmGUI
cdf affy affylmGUI affyio cdf affy affylmGUI affyio
updated 16.7 years ago by ▴ 450 • written 16.7 years ago by ▴ 450
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1
reply
1.0k
views
Re: Limma GUI exporting
Microarray limma affylmGUI limmaGUI Microarray limma affylmGUI limmaGUI
19.8 years ago James Wettenhall ▴ 1000
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votes
3
replies
1.2k
views
Defining and handling replicates
GO affy limma affylmGUI GO affy limma affylmGUI
updated 18.9 years ago by 50k • written 18.9 years ago by ▴ 70
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1
reply
722
views
Is rma in affylmGUI different to affy rma?
affy affylmGUI affy affylmGUI
19.9 years ago Simon Kidd ▴ 180
0
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1
reply
876
views
default fdr rate in limma/affylmgui
affylmGUI affylmGUI
updated 16.0 years ago by 65k • written 16.0 years ago by ▴ 420
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votes
1
reply
945
views
how to import mas5 data into expresso (affy package)
Microarray limma PROcess affylmGUI Microarray limma PROcess affylmGUI
updated 15.9 years ago by 65k • written 15.9 years ago by ▴ 80
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3
replies
3.3k
views
Cutoff to use for IQR filtering in genefilter
affylmGUI affylmGUI
updated 15.8 years ago by ▴ 400 • written 15.8 years ago by ▴ 80
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votes
1
reply
907
views
Anopheles/malaria Affy chips
affy simpleaffy affylmGUI affy simpleaffy affylmGUI
updated 19.9 years ago by ▴ 950 • written 19.9 years ago by ▴ 510
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18
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2.3k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE affylmGUI Cancer gcrma LPE affylmGUI
updated 15.5 years ago by ▴ 70 • written 15.5 years ago by ★ 13k
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8
replies
1.5k
views
affylmGUI segfault on "pd.ragene.1.0.st.v1"
Normalization GO cdf affy affylmGUI Normalization GO cdf affy affylmGUI
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 70
0
votes
1
reply
760
views
Please add hugene10stv1.cdf
cdf limma affylmGUI cdf limma affylmGUI
updated 15.1 years ago by 65k • written 15.1 years ago by ▴ 10
0
votes
1
reply
750
views
affylmGUI
affylmGUI affylmGUI
updated 19.9 years ago by ▴ 1000 • written 19.9 years ago by ▴ 120
0
votes
2
replies
999
views
R scripts from AffylmGUI
Microarray affylmGUI Microarray affylmGUI
updated 14.8 years ago by ▴ 450 • written 14.8 years ago by ▴ 200
0
votes
1
reply
919
views
Affy huGENE ST arrays
cdf affy affylmGUI cdf affy affylmGUI
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 10
0
votes
2
replies
1.2k
views
Bioconductor does not provide Humane gene ST annotation "hugene10stv1cdf" to work with affylmGUI?!
Annotation cdf affylmGUI Annotation cdf affylmGUI
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 10
0
votes
1
reply
795
views
FW: Question (vennDiagram vs. topTable) for AffylmGUI 1.3.0
GO limma affylmGUI GO limma affylmGUI
updated 18.6 years ago by 50k • written 18.6 years ago by ▴ 50
0
votes
1
reply
830
views
Access to Affy chip annotation data in affylmGUI
mouse4302 affylmGUI mouse4302 affylmGUI
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 10
0
votes
2
replies
873
views
affylmGUI problem with tkcmd
affylmGUI affylmGUI
updated 17.3 years ago by ▴ 80 • written 17.4 years ago by ★ 7.4k
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0
replies
1.1k
views
TopTable function in affylmGUI does not have Gene names
affylmGUI affylmGUI
12.4 years ago Guest User ★ 13k
0
votes
0
replies
1.0k
views
Issues running affylmGUI
Cancer Breast affylmGUI Cancer Breast affylmGUI
13.4 years ago Lorenzo Melchor ▴ 50
50 results • Page 1 of 1
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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