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Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with oligo for DE analysis
updated 23 months ago by
Yang Shi
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svlachavas
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updated 9.0 years ago by
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updated 5.0 years ago by
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written 5.0 years ago by
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updated 9.3 years ago by
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written 9.3 years ago by
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written 8.4 years ago by
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updated 9.3 years ago by
Gordon Smyth
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Comment: minfi::read.metharray.exp
by
clacarion
•
0
I think its work with `read.metharray.sheet`
```r
> sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
•
0
Thank you for your response Basti !
I add all the idat files in a unique folder called "idat" and add it in my path
```r
> list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴
10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴
10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far.
I'm underdegree biotechnology student, and I learning bioinformatic…
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