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affymetrixchip
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1
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Affymetrix analysis Chiptype hgu133plus2hsentrezg.db vs hgu133plus2.db
hgu133plus2hsentrezg.db
chiptype
chipster
hgu133plus2.db
AffymetrixChip
9 months ago
alexia.brunel
• 0
0
votes
1
reply
432
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Affymetrix hgu133plus2.db: How to best derive an expression value for genes that map to multiple probe ids
affydata
hgu133plus2.db
AffymetrixChip
updated 8 months ago by
ATpoint
★ 4.0k • written 8 months ago by
Matthias Munz
▴ 10
1
vote
4
replies
617
views
How to annotate mir4.1 arrays?
AffymetrixChip
miRNA
oligo
10 months ago • updated 7 months ago
richardallenfriedmanbrooklyn
▴ 20
2
votes
2
replies
610
views
Question about transforming log expression values to antilog values in limma
IlluminaChip
limma
AffymetrixChip
Normalization
Microarray
11 months ago
Abdul
▴ 20
0
votes
4
replies
295
views
Unable to annotate ExpressionSet object from hugene11st chip
oligo
limma
hugene11stprobeset.db
AffymetrixChip
10 days ago • updated 2 days ago
Efra
• 0
0
votes
0
replies
470
views
Volcano plot
limma
AffymetrixChip
11 months ago
e.gunaut
• 0
6 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Answer: Merging featureCounts output for different species
by
Michael Love
41k
Bioconductor support site is for posting questions about software. Try biostars.
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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Pierre Lindenbaum
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Gordon Smyth
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Jenny Drnevich
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Robert Castelo
★ 3.1k
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Peter Langfelder
★ 2.9k
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