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Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
by
wahaha
•
0
I found the reason, because some gene expression levels are 0 in all samples.
you can add these code to check the data:
>exp_mean <- appl…
Answer: DESeq2 how to specify contrast to test difference of differences
by
Nicole
•
0
The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…
Comment: DESeq2 how to specify contrast to test difference of differences
by
Nicole
•
0
Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…
Comment: Rsamtools is not available for (for R version 4.0.2)
by
olinares-perdomo
•
0
I had the same problem (R 4.2.0)
I used
BiocManager::install("Rsamtools", force = TRUE)
And it is working fine
Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a
by
Gordon Smyth
45k
When I answered your original question, I assumed you would use the simplest possible code
```
Status <- factor(Sample_info$Status)
```
w…
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