Showing : agilent • reset
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summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 9.3 years ago by 50k • written 9.3 years ago by ▴ 240
0
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2
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1.4k
views
Annotation package for Agilent Human G4110A chip
Agilent annotation
updated 9.2 years ago by 50k • written 16.1 years ago by ★ 1.1k
3
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4
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5.0k
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LIMMA and Agilent single color
Annotation probe limma agilent
13.3 years ago • updated 7.3 years ago Gordon Smyth 50k
2
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4
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2.3k
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a question about input agilent single-channel data to R and analyze
Agilent microarray
updated 9.5 years ago by 50k • written 9.5 years ago by • 0
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2.5k
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which Agilent annotation db?
agilent annotation
8.9 years ago Frederico Moraes Ferreira ▴ 100
1
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2.0k
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Normalize between Arrays (Agilent two color)
limma agilent
updated 8.8 years ago by 50k • written 8.8 years ago by • 0
5
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10
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1.6k
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Limma Design Matrix for two channel agilent arrays (direct experimental design)
Limma limma design matrix agilent twochannel
8.2 years ago pm2015 • 0
3
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9
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2.4k
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Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
8.2 years ago Konstantinos Yeles ▴ 80
1
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2
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951
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Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent single channel plotMA background correction
updated 5.9 years ago by 50k • written 5.9 years ago by ▴ 10
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12
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2.2k
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avereps with probes mapping to multiple genes (Agilent dual color microarray)
limma avereps probe mapping microarray Agilent
updated 5.3 years ago by 50k • written 5.3 years ago by ▴ 30
0
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1
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653
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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 21 months ago by 50k • written 21 months ago by • 0
6
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4
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3.1k
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AnnotationData Packages for Agilent microarrays
microarray annotation limma .db Agilent
updated 4.6 years ago by 65k • written 4.6 years ago by ▴ 30
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2
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1.3k
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microarray agilent data
microarray agilent limma
updated 8.7 years ago by ▴ 130 • written 8.7 years ago by • 0
2
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5
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2.0k
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Problems with "read.agiMicroRna"
read.agiMicroRna agilent limma microarray mirna
updated 8.6 years ago by ▴ 30 • written 8.6 years ago by ▴ 10
3
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9
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1.9k
views
Single channel analysis of two-color agilent array using limma
agilent limma twochannel microarray
updated 8.6 years ago by 50k • written 8.6 years ago by • 0
2
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1
reply
3.9k
views
Find correct annotation for specific agilent platforms Whole Human Genome Microarray 4x44K
agilent whole Human Genome Microarray 4X44K annotationdbi bioconductor
8.5 years ago Konstantinos Yeles ▴ 80
0
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2
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1.9k
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Agilent Data Normalization Method
limma agilent
updated 8.5 years ago by 50k • written 8.5 years ago by • 0
1
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2
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1.3k
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BioMart Attributes/Filters missing
microarray agilent biomart annotation
updated 8.4 years ago by 65k • written 8.4 years ago by • 0
3
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1
reply
763
views
Create a '.db' package for agilent
R agilent microarray
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 20
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7
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1.0k
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Problems with analysing Agilent G3 GEx Rat V2 chips
Agilent limma
2.7 years ago AB • 0
3
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3
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3.9k
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Negative values after normalizing an agilent microarray dataset with limma
limma agilent offset background correction microarray
updated 8.2 years ago by 65k • written 8.2 years ago by ▴ 80
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3
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1.6k
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problem with update limma - green channel missing
limma bioconductor read.maimages agilent 8x60K
9.1 years ago wd ▴ 30
0
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1
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1.1k
views
replacement package Agi4x44PreProcess
microarray agilent
updated 8.8 years ago by ★ 1.0k • written 8.8 years ago by ▴ 320
0
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2
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1.3k
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 7.4 years ago by 50k • written 7.4 years ago by ▴ 10
0
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1
reply
1.1k
views
annotation of agillent array G3 Human Gene Expression v3 8x50
microarray annotation agilent
updated 7.2 years ago by 65k • written 7.2 years ago by ▴ 40
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7
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1.8k
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Help with diff. expression analysis of Agilent files
microarray agilent differential gene expression R
updated 6.9 years ago by ★ 1.0k • written 6.9 years ago by ▴ 30
2
votes
11
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2.0k
views
Agilent One Channel Data: Will I be able to use limma with flagged data removed.
limma agilent
6.1 years ago CantExitVIM ▴ 10
1
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1
reply
1.1k
views
Agilent Data Normalization Result
limma agilent arrayexpress
updated 6.1 years ago by 50k • written 6.1 years ago by • 0
2
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3
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1.3k
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how to set design for 2-dye Agilent array experiment with common reference group?
limma 2-dye agilent common reference design
updated 8.4 years ago by 65k • written 8.4 years ago by ★ 3.9k
3
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4
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1.2k
views
Agilent Single-Channel Data: Questions about model statement and model building.
limma agilent microarray covariates
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 10
0
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1
reply
681
views
Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 2.5 years ago by 50k • written 2.5 years ago by • 0
1
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2
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1.0k
views
covert from RGList to uRNAList
agilent agimicrorna
updated 5.4 years ago by 50k • written 5.4 years ago by ▴ 30
2
votes
4
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3.0k
views
exporting limma log2 data
limma export log2 data agilent
updated 9.5 years ago by 65k • written 9.5 years ago by ▴ 110
2
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2
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2.1k
views
Analysing two-channel Agilent microarray data
limma microarray agilent
updated 9.4 years ago by 50k • written 9.4 years ago by • 0
0
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1
reply
1.6k
views
Annotation for Agilent chip DesignID 39494 (one color array)
agilent microarray annotation
updated 9.2 years ago by 50k • written 9.2 years ago by ▴ 150
0
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9
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2.3k
views
Question about Agilent microarray data measurement
Agilent limma scan.upc microarray
7.4 years ago Maximilian ▴ 10
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0
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782
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Processing of agilent data
agilent
6.2 years ago Agaz Hussain Wani ▴ 260
37 results • Page 1 of 1
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by sredemption • 0
Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you for your reply and I know there is another post similar to this you had mentioned this. How are the genes that I mentioned in the…
Answer: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
The genes are automatically ordered within `fgsea`, there is no need to sort them manually.
Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k
Make an MAplot. There is almost certainly an issue with normalization here given the very biased distribution of logFCs as in this Volcano.
Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100
See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…
Votes
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
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