Showing : agilent • reset
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471
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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 14 months ago by 48k • written 14 months ago by • 0
0
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1
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530
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Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 22 months ago by 48k • written 22 months ago by • 0
0
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7
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775
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Problems with analysing Agilent G3 GEx Rat V2 chips
Agilent limma
2.2 years ago AB • 0
3
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1
reply
632
views
Create a '.db' package for agilent
R agilent microarray
updated 3.0 years ago by 63k • written 3.0 years ago by ▴ 20
6
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4
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2.5k
views
AnnotationData Packages for Agilent microarrays
microarray annotation limma .db Agilent
updated 4.0 years ago by 63k • written 4.0 years ago by ▴ 30
1
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12
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1.8k
views
avereps with probes mapping to multiple genes (Agilent dual color microarray)
limma avereps probe mapping microarray Agilent
updated 4.7 years ago by 48k • written 4.7 years ago by ▴ 30
1
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2
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828
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covert from RGList to uRNAList
agilent agimicrorna
updated 4.8 years ago by 48k • written 4.8 years ago by ▴ 30
1
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2
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789
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent single channel plotMA background correction
updated 5.3 years ago by 48k • written 5.3 years ago by ▴ 10
3
votes
4
replies
972
views
Agilent Single-Channel Data: Questions about model statement and model building.
limma agilent microarray covariates
updated 5.4 years ago by 48k • written 5.4 years ago by ▴ 10
1
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1
reply
876
views
Agilent Data Normalization Result
limma agilent arrayexpress
updated 5.5 years ago by 48k • written 5.5 years ago by • 0
2
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11
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1.5k
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Agilent One Channel Data: Will I be able to use limma with flagged data removed.
limma agilent
5.5 years ago CantExitVIM ▴ 10
0
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0
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672
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Processing of agilent data
agilent
5.6 years ago Agaz Hussain Wani ▴ 260
0
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7
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1.5k
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Help with diff. expression analysis of Agilent files
microarray agilent differential gene expression R
updated 6.4 years ago by ▴ 990 • written 6.4 years ago by ▴ 30
0
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1
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990
views
annotation of agillent array G3 Human Gene Expression v3 8x50
microarray annotation agilent
updated 6.7 years ago by 63k • written 6.7 years ago by ▴ 40
0
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2
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1.1k
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 6.9 years ago by 48k • written 6.9 years ago by ▴ 10
0
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9
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2.0k
views
Question about Agilent microarray data measurement
Agilent limma scan.upc microarray
6.9 years ago Maximilian ▴ 10
3
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3
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3.5k
views
Negative values after normalizing an agilent microarray dataset with limma
limma agilent offset background correction microarray
updated 7.6 years ago by 63k • written 7.6 years ago by ▴ 80
3
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9
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2.1k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
7.7 years ago Konstantinos Yeles ▴ 80
5
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10
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1.4k
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Limma Design Matrix for two channel agilent arrays (direct experimental design)
Limma limma design matrix agilent twochannel
7.7 years ago pm2015 • 0
1
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2
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1.2k
views
BioMart Attributes/Filters missing
microarray agilent biomart annotation
updated 7.8 years ago by 63k • written 7.8 years ago by • 0
2
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3
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1.2k
views
how to set design for 2-dye Agilent array experiment with common reference group?
limma 2-dye agilent common reference design
updated 7.8 years ago by 63k • written 7.8 years ago by ★ 3.7k
0
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2
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1.7k
views
Agilent Data Normalization Method
limma agilent
updated 7.9 years ago by 48k • written 7.9 years ago by • 0
2
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1
reply
3.6k
views
Find correct annotation for specific agilent platforms Whole Human Genome Microarray 4x44K
agilent whole Human Genome Microarray 4X44K annotationdbi bioconductor
8.0 years ago • updated 7.9 years ago Konstantinos Yeles ▴ 80
3
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9
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1.7k
views
Single channel analysis of two-color agilent array using limma
agilent limma twochannel microarray
updated 8.0 years ago by 48k • written 8.0 years ago by • 0
2
votes
5
replies
1.7k
views
Problems with "read.agiMicroRna"
read.agiMicroRna agilent limma microarray mirna
updated 8.0 years ago by ▴ 30 • written 8.0 years ago by ▴ 10
0
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2
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1.1k
views
microarray agilent data
microarray agilent limma
updated 8.2 years ago by ▴ 130 • written 8.2 years ago by • 0
1
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2
replies
1.8k
views
Normalize between Arrays (Agilent two color)
limma agilent
updated 8.2 years ago by 48k • written 8.2 years ago by • 0
0
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1
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998
views
replacement package Agi4x44PreProcess
microarray agilent
updated 8.2 years ago by ▴ 990 • written 8.2 years ago by ▴ 320
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2
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2.4k
views
which Agilent annotation db?
agilent annotation
8.3 years ago Frederico Moraes Ferreira ▴ 100
0
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3
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1.5k
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problem with update limma - green channel missing
limma bioconductor read.maimages agilent 8x60K
8.6 years ago wd ▴ 30
0
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1
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1.5k
views
Annotation for Agilent chip DesignID 39494 (one color array)
agilent microarray annotation
updated 8.7 years ago by 48k • written 8.7 years ago by ▴ 150
1
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2
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1.9k
views
summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 8.7 years ago by 48k • written 8.7 years ago by ▴ 240
2
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2
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1.9k
views
Analysing two-channel Agilent microarray data
limma microarray agilent
updated 8.9 years ago by 48k • written 8.9 years ago by • 0
2
votes
4
replies
2.8k
views
exporting limma log2 data
limma export log2 data agilent
updated 8.9 years ago by 63k • written 8.9 years ago by ▴ 110
2
votes
4
replies
1.9k
views
a question about input agilent single-channel data to R and analyze
Agilent microarray
updated 8.9 years ago by 48k • written 8.9 years ago by • 0
3
votes
4
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4.7k
views
LIMMA and Agilent single color
Annotation probe limma agilent
12.8 years ago • updated 6.7 years ago Gordon Smyth 48k
0
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2
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1.3k
views
Annotation package for Agilent Human G4110A chip
Agilent annotation
updated 8.7 years ago by 48k • written 15.5 years ago by ★ 1.1k
37 results • Page 1 of 1
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Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
Hi Koki, sorry for not seeing this before. > will SparseArraySeed in DelayedArray be replaced by this new sparse array format? Yes it wil…
Comment: Manual creation of qPCRset does not work by Ed Siefker ▴ 230
Thanks! This works for me.
Answer: Manual creation of qPCRset does not work by James W. MacDonald 63k
``` > mat <- matrix(rnorm(6*96), ncol = 6, nrow = 96, byrow = FALSE) > pd <- new("AnnotatedDataFrame", data = data.frame(1:6, row.names …
Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k
In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…
Comment: T.fit function of maSigPro returns error message by hanna.g • 0
Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …
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Answer: Manual creation of qPCRset does not work
Answer: MDS plot edgeR
A: legend with gradient in ComplexHeatmap
Comment: comparing contrasts in edger/lima using makeContrasts function
Answer: comparing contrasts in edger/lima using makeContrasts function
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