Showing : agimicrorna • reset
1
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covert from RGList to uRNAList
agilent agimicrorna
updated 5.4 years ago by 50k • written 5.4 years ago by ▴ 30
1
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2
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1.1k
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Package: AgiMicroRna; Error in Loading the file
AgiMicroRna
6.5 years ago neelakandanbt • 0
0
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3
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1.2k
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Agilent Array Analysis Question
affy limma Agi4x44PreProcess AgiMicroRna affy limma Agi4x44PreProcess AgiMicroRna
updated 14.4 years ago by ★ 1.3k • written 14.4 years ago by ▴ 350
0
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6
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1.8k
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Normalisation of Agilent microRNA arrays using inbuilt controls?
GO Cancer vsn AgiMicroRna GO Cancer vsn AgiMicroRna
updated 14.2 years ago by ★ 3.6k • written 14.2 years ago by ★ 1.9k
0
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1.3k
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AgiMicroRna package is not available at bioconductor or not in active form???
Microarray Network microRNA AgiMicroRna Microarray Network microRNA AgiMicroRna
updated 14.1 years ago by ▴ 60 • written 14.1 years ago by 21k
0
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1
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1.1k
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segfault with rmaMicroRna in AgiMicroRna package
PROcess AgiMicroRna PROcess AgiMicroRna
updated 14.0 years ago by ★ 7.4k • written 14.0 years ago by ▴ 360
0
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AgiMicroRna - FilterMicroRna and SignificantMicroRna function
miRNA zebrafish probe AgiMicroRna miRNA zebrafish probe AgiMicroRna
13.9 years ago Neel Aluru ▴ 460
0
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1
reply
844
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AgiMicroRna package error message
Normalization microRNA AgiMicroRna Normalization microRNA AgiMicroRna
13.8 years ago Wang, Yonghong NIH/NCI ▴ 60
0
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1
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1.0k
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Error message with rmaMicroRna on mouse data in AgiMicroRNA
Cancer probe AgiMicroRna Cancer probe AgiMicroRna
updated 13.8 years ago by ▴ 360 • written 13.8 years ago by ★ 2.0k
0
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0
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686
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mvaPlots of RMA normalized data in AgiMicroRNA
Cancer AgiMicroRna Cancer AgiMicroRna
13.8 years ago Richard Friedman ★ 2.0k
0
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0
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716
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AgiMicroRna and ComBat
miRNA probe AgiMicroRna miRNA probe AgiMicroRna
13.8 years ago Segal, Corrinne ▴ 40
0
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4
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1.3k
views
Model variable optimisation
Regression probe limma AgiMicroRna Regression probe limma AgiMicroRna
updated 13.8 years ago by ▴ 330 • written 13.8 years ago by ▴ 60
0
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1
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1.2k
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AgiMicroRna and readMicroRnaFE
miRNA AgiMicroRna miRNA AgiMicroRna
updated 13.6 years ago by ★ 2.0k • written 13.6 years ago by ▴ 200
0
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8
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1.8k
views
AgiMicroRna problems
Normalization PROcess microRNA AgiMicroRna Normalization PROcess microRNA AgiMicroRna
13.6 years ago Mark Cowley ▴ 910
0
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4
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1.6k
views
Loading data into AgiMicroRna
AgiMicroRna AgiMicroRna
updated 13.5 years ago by ▴ 460 • written 13.5 years ago by ▴ 280
0
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1
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1.2k
views
AgiMicroRna problem
Annotation microRNA AgiMicroRna Annotation microRNA AgiMicroRna
updated 13.2 years ago by ▴ 200 • written 13.2 years ago by ▴ 120
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0
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762
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ProbeNames are not matching miR names in RMA-normalized data with AgiMicroRna
miRNA Microarray Normalization AgiMicroRna miRNA Microarray Normalization AgiMicroRna
13.2 years ago Paola Ostano ▴ 10
0
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3
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1.5k
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AgiMicroRna with single channel Agilent Array
AgiMicroRna AgiMicroRna
12.8 years ago John Lande ▴ 280
0
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0
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968
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Limma - batch issues
miRNA Microarray limma PROcess AgiMicroRna miRNA Microarray limma PROcess AgiMicroRna
12.8 years ago Segal, Corrinne ▴ 40
0
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0
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809
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filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe microRNA AgiMicroRna probe microRNA AgiMicroRna
12.7 years ago Viki S ▴ 20
0
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1
reply
787
views
Installing AgiMicroRna Package
AgiMicroRna AgiMicroRna
updated 12.2 years ago by 25k • written 12.2 years ago by ▴ 200
0
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0
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1.1k
views
Issues with AgiMicroRna filtering step (Error in is(ddNORM, "uRNAList") : object 'ddNORM' not found)
probe AgiMicroRna probe AgiMicroRna
12.2 years ago Karthik K N ▴ 200
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6
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1.5k
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Important: Help with eBayes in AgiMicrRna and on how to find differentially expressed genes
bgx AgiMicroRna bgx AgiMicroRna
updated 12.2 years ago by ▴ 60 • written 12.2 years ago by ▴ 200
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6
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1.3k
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AgiMicroRna and Replicates
AgiMicroRna AgiMicroRna
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ▴ 200
0
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3
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2.6k
views
Access to Source Codes of Packges
limma AgiMicroRna limma AgiMicroRna
updated 11.8 years ago by 21k • written 11.8 years ago by ▴ 200
0
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4
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1.7k
views
Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization GeneSpring microRNA AgiMicroRna Normalization GeneSpring microRNA AgiMicroRna
updated 11.7 years ago by ★ 1.3k • written 11.7 years ago by ▴ 30
0
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0
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1.2k
views
segmentation fault in rma.background.correct()
GO Preprocessing AgiMicroRna GO Preprocessing AgiMicroRna
11.6 years ago Axel Klenk ★ 1.0k
0
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1.2k
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Agilent Chip G4858A-039494: columns gTotalGeneSignal, gTotalProbeSignal missing for AgiMicroRna
GO AgiMicroRna GO AgiMicroRna
11.2 years ago Guest User ★ 13k
0
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1
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1.7k
views
AgiMicroRna for new Agilent Chip format - columns gTotalGeneSignal and gTotalProbeSignal missing
GO AgiMicroRna GO AgiMicroRna
updated 11.2 years ago by ★ 1.0k • written 11.2 years ago by ★ 13k
0
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0
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1.7k
views
AgiMicroRna for new Agilent Chip format
Microarray GO limma PROcess microRNA AgiMicroRna Microarray GO limma PROcess microRNA
11.2 years ago Gordon Smyth 50k
0
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0
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1.1k
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Inappropriate Statistical Models for Agilent microRNA Microarray Data
agimicrorna linear model
8.1 years ago Dario Strbenac ★ 1.5k
0
votes
0
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997
views
AgiMicroRna_Error in xy.coords(x, y) : 'x' and 'y' lengths differ(tgsNormalization)
AgimicroRNA
7.6 years ago cpsingh9 • 0
0
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2
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1.3k
views
problems in reading a file in AgiMicroRna package
agimicrorna read.agimicrorna agilent microarrays
updated 6.5 years ago by ★ 1.0k • written 6.5 years ago by • 0
0
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1.1k
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Agi4x44PreProcess
GUI zebrafish probe AgiMicroRna GUI zebrafish probe AgiMicroRna
13.6 years ago Neel Aluru ▴ 460
0
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1
reply
559
views
Unable to use the function named read.agiMicroRna()
AgiMicroRna
updated 4.4 years ago by 65k • written 4.4 years ago by ▴ 10
0
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3
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1.2k
views
AgiMicroRna problems
miRNA Normalization FeatureExtraction PROcess microRNA AgiMicroRna miRNA Normalization
updated 13.6 years ago by ▴ 230 • written 13.6 years ago by ▴ 910
36 results • Page 1 of 1
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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